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crb-blast
|
public |
Conditional Reciprocal Best BLAST - high confidence ortholog assignment.
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2023-06-16 |
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openmg
|
public |
Exhaustive generation of chemical structures
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2023-06-16 |
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perl-exporter-tidy
|
public |
Another way of exporting symbols
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2023-06-16 |
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perl-biox-workflow
|
public |
A very opinionated template based workflow writer.
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2023-06-16 |
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r-genenet
|
public |
Analyzes gene expression (time series) data with focus on the inference of gene networks. In particular, GeneNet implements the methods of Schaefer and Strimmer (2005a,b,c) and Opgen-Rhein and Strimmer (2006, 2007) for learning large-scale gene association networks (including assignment of putative directions).
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2023-06-16 |
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intermine
|
public |
InterMine WebService client
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2023-06-16 |
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perl-proc-fork
|
public |
simple, intuitive interface to the fork() system call
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2023-06-16 |
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r-fitdistrplus
|
public |
Extends the fitdistr function (of the MASS package) with several functions to help the fit of a parametric distribution to non-censored or censored data. Censored data may contain left censored, right censored and interval censored values, with several lower and upper bounds. In addition to maximum likelihood estimation (MLE), the package provides moment matching (MME), quantile matching (QME) and maximum goodness-of-fit estimation (MGE) methods (available only for non-censored data). Weighted versions of MLE, MME and QME are available.
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2023-06-16 |
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bioconductor-rcytoscape
|
public |
Interactvive viewing and exploration of graphs, connecting R to Cytoscape.
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2023-06-16 |
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scikit-allel
|
public |
A Python package for exploring and analysing genetic variation data.
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2023-06-16 |
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ccat
|
public |
CCAT is a software package for the analysis of ChIP-seq data with negative control.
|
2023-06-16 |
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ra
|
public |
Ra is short for RNA Assembler and it is a C++ implementation of an overlap-layout-consensus transcriptome assembler.
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2023-06-16 |
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scikit-bio
|
public |
Data structures, algorithms and educational resources for bioinformatics.
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2023-06-16 |
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peddy
|
public |
genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
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2023-06-16 |
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perl-velvetoptimiser
|
public |
Automatically optimise three of Velvet's assembly parameters.
|
2023-06-16 |
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check-sort-order
|
public |
check sort-order of genomic files according to a genomefile
|
2023-06-16 |
|
sam
|
public |
SAM - Sequence Alignment and Modeling System
|
2023-06-16 |
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datamash
|
public |
GNU Datamash is a command-line program which performs basic numeric,textual and statistical operations on input textual data files.
|
2023-06-16 |
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r-proj4
|
public |
A simple interface to lat/long projection and datum transformation of the PROJ.4 cartographic projections library. It allows transformation of geographic coordinates from one projection and/or datum to another.
|
2023-06-16 |
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graphlan
|
public |
GraPhlAn is a software tool for producing high-quality circular representations of taxonomic and phylogenetic trees.
|
2023-06-16 |
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cgat-report
|
public |
A report generator in python based on sphinx
|
2023-06-16 |
|
perl-hpc-runner-mce
|
public |
Job submission using MCE
|
2023-06-16 |
|
r-rsm
|
public |
Provides functions to generate response-surface designs, fit first- and second-order response-surface models, make surface plots, obtain the path of steepest ascent, and do canonical analysis.
|
2023-06-16 |
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r-changepoint
|
public |
Implements various mainstream and specialised changepoint methods for finding single and multiple changepoints within data. Many popular non-parametric and frequentist methods are included. The cpt.mean(), cpt.var(), cpt.meanvar() functions should be your first point of call.
|
2023-06-16 |
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carna
|
public |
Multiple alignment of RNAs
|
2023-06-16 |
|
melt
|
public |
A nucleotide melt temp calculator
|
2023-06-16 |
|
perl-role-tiny
|
public |
Roles. Like a nouvelle cuisine portion size slice of Moose.
|
2023-06-16 |
|
perl-moo
|
public |
Minimalist Object Orientation (with Moose compatibility)
|
2023-06-16 |
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perl-sub-exporter-progressive
|
public |
Only use Sub::Exporter if you need it
|
2023-06-16 |
|
group_humann2_uniref_abundances_to_go
|
public |
Group abundances of UniRef50 gene families obtained with HUMAnN2 to Gene Ontology (GO) slim terms with relative abundances
|
2023-06-16 |
|
perl-class-method-modifiers
|
public |
Provides Moose-like method modifiers
|
2023-06-16 |
|
r-xnomial
|
public |
Tests whether a set of counts fit a given expected ratio. For example, a genetic cross might be expected to produce four types in the relative frequencies of 9:3:3:1. To see whether a set of observed counts fits this expectation, one can examine all possible outcomes with xmulti() or a random sample of them with xmonte() and find the probability of an observation deviating from the expectation by at least as much as the observed. As a measure of deviation from the expected, one can use the log-likelihood ratio, the multinomial probability, or the classic chi-square statistic. A histogram of the test statistic can also be plotted and compared with the asymptotic curve.
|
2023-06-16 |
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somatic-sniper
|
public |
A tool to call somatic single nucleotide variants.
|
2023-06-16 |
|
pysnptools
|
public |
Python library for reading and manipulating genetic data
|
2023-06-16 |
|
goatools
|
public |
Python scripts to find enrichment of GO terms
|
2023-06-16 |
|
perl-dist-checkconflicts
|
public |
declare version conflicts for your dist
|
2023-06-16 |
|
perl-module-implementation
|
public |
Loads one of several alternate underlying implementations for a module
|
2023-06-16 |
|
sqt
|
public |
Command-line tools for the analysis of high-throughput sequencing data
|
2023-06-16 |
|
gsort
|
public |
sort genomic files according to a genomefile
|
2023-06-16 |
|
networkxgmml
|
public |
XGMML parser for networkx
|
2023-06-16 |
|
r-snowfall
|
public |
Usability wrapper around snow for easier development of parallel R programs. This package offers e.g. extended error checks, and additional functions. All functions work in sequential mode, too, if no cluster is present or wished. Package is also designed as connector to the cluster management tool sfCluster, but can also used without it.
|
2023-06-16 |
|
schema
|
public |
Simple data validation library
|
2023-06-16 |
|
perl-test-nowarnings
|
public |
Make sure you didn't emit any warnings while testing
|
2023-06-16 |
|
peewee
|
public |
a little orm
|
2023-06-16 |
|
perl-class-std-fast
|
public |
faster but less secure than Class::Std
|
2023-06-16 |
|
pymummer
|
public |
Wrapper for MUMmer
|
2023-06-16 |
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r-scatterplot3d
|
public |
Plots a three dimensional (3D) point cloud.
|
2023-06-16 |
|
perl-xml-simple
|
public |
An API for simple XML files
|
2023-06-16 |
|
pyfastaq
|
public |
Script to manipulate FASTA and FASTQ files, plus API for developers
|
2023-06-16 |
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perl-xml-sax-expat
|
public |
SAX Driver for Expat
|
2023-06-16 |
