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argparse
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public |
No Summary
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2023-06-16 |
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rmap
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public |
No Summary
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2023-06-16 |
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gnuplot-py
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public |
No Summary
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2023-06-16 |
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scala
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public |
No Summary
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2023-06-16 |
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inforna
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public |
No Summary
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2023-06-16 |
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extract_genome_region
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public |
No Summary
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2023-06-16 |
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rnabob
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public |
No Summary
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2023-06-16 |
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circexplorer2
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public |
Circular RNA analysis toolkits
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2023-06-16 |
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brass
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public |
No Summary
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2023-06-16 |
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pileometh
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public |
A (mostly) universal methylation extractor for BS-seq experiments.
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2023-06-16 |
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perl-grass
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public |
No Summary
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2023-06-16 |
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mmtf-python
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public |
A decoding libary for the PDB mmtf format
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2023-06-16 |
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r-bigmemory
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public |
Create, store, access, and manipulate massive matrices. Matrices are allocated to shared memory and may use memory-mapped files. Packages 'biganalytics', 'bigtabulate', 'synchronicity', and 'bigalgebra' provide advanced functionality.
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2023-06-16 |
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bats
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public |
Bash automated testing system
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2023-06-16 |
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r-bigmemory.sri
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public |
This package provides a shared resource interface for the bigmemory and synchronicity packages.
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2023-06-16 |
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triform2
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public |
Improved sensitivity, specificity and control of false discovery rates in ChIP-Seq peak finding.
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2023-06-16 |
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chainmap
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public |
Backport/clone of ChainMap for py26, py32, and pypy3.
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2023-06-16 |
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r-bma
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public |
Package for Bayesian model averaging and variable selection for linear models, generalized linear models and survival models (cox regression).
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2023-06-16 |
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r-inline
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public |
Functionality to dynamically define R functions and S4 methods with inlined C, C++ or Fortran code supporting .C and .Call calling conventions.
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2023-06-16 |
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pycsg
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public |
Python port of csg.js from Evan Wallace
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2023-06-16 |
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r-leaps
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public |
No Summary
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2023-06-16 |
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data_hacks
|
public |
Command line utilities for data analysis.
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2023-06-16 |
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r-fastcluster
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public |
This is a two-in-one package which provides interfaces to both R and Python. It implements fast hierarchical, agglomerative clustering routines. Part of the functionality is designed as drop-in replacement for existing routines: linkage() in the SciPy package 'scipy.cluster.hierarchy', hclust() in R's 'stats' package, and the 'flashClust' package. It provides the same functionality with the benefit of a much faster implementation. Moreover, there are memory-saving routines for clustering of vector data, which go beyond what the existing packages provide. For information on how to install the Python files, see the file INSTALL in the source distribution.
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2023-06-16 |
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detonate
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public |
DETONATE (DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation) consists of two component packages, RSEM-EVAL and REF-EVAL.
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2023-06-16 |
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requests-mock
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public |
Mock out responses from the requests package
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2023-06-16 |
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r-solarius
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public |
SOLAR is the standard software program to perform linkage and association mappings of the quantitative trait loci (QTLs) in pedigrees of arbitrary size and complexity. This package allows the user to exploit the variance component methods implemented in SOLAR. It automates such routine operations as formatting pedigree and phenotype data. It also parses the model output and contains summary and plotting functions for exploration of the results. In addition, solarius enables parallel computing of the linkage and association analyses, that makes the calculation of genome-wide scans more efficient. See <http://solar.txbiomedgenetics.org/> for more information about SOLAR.
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2023-06-16 |
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graph_embed
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public |
Compute a 2D embedding of a data matrix given supervised class information.
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2023-06-16 |
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tabview
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public |
A curses command-line CSV and list (tabular data) viewer
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2023-06-16 |
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metavelvet-sl
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public |
MetaVelvet-SL : An extension of Velvet assembler to de novo metagenomic assembler utilizing supervised learning
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2023-06-16 |
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astalavista
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public |
No Summary
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2023-06-16 |
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genomicassertions
|
public |
A package to test common files in genomics (.vcf.gz, .bam)
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2023-06-16 |
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metavelvet-sl-feature-extraction
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public |
Perl libraries that do feature extraction for metavelvet-sl
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2023-06-16 |
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sphinx-argparse
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public |
Sphinx extension that automatically document argparse commands and options
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2023-06-16 |
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perl-number-compare
|
public |
numeric comparisons
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2023-06-16 |
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metavelvet
|
public |
MetaVelvet : An extension of Velvet assembler to de novo metagenome assembly from short sequence reads
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2023-06-16 |
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barrnap
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public |
Barrnap predicts the location of ribosomal RNA genes in genomes. (bacteria, archaea, metazoan mitochondria and eukaryotes.)
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2023-06-16 |
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r-bh
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public |
Boost provides free peer-reviewed portable C++ source libraries. A large part of Boost is provided as C++ template code which is resolved entirely at compile-time without linking. This package aims to provide the most useful subset of Boost libraries for template use among CRAN package. By placing these libraries in this package, we offer a more efficient distribution system for CRAN as replication of this code in the sources of other packages is avoided. . As of release 1.60.0-2, the following Boost libraries are included: 'algorithm' 'any' 'bimap' 'bind' 'circular_buffer' 'concept' 'config' 'container' 'date'_'time' 'detail' 'dynamic_bitset' 'exception' 'filesystem' 'flyweight' 'foreach' 'functional' 'fusion' 'geometry' 'graph' 'heap' 'icl' 'integer' 'interprocess' 'intrusive' 'io' 'iostreams' 'iterator' 'math' 'move' 'mpl' 'multiprcecision' 'numeric' 'pending' 'phoenix' 'preprocessor' 'random' 'range' 'smart_ptr' 'spirit' 'tuple' 'type_trains' 'typeof' 'unordered' 'utility' 'uuid'.
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2023-06-16 |
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r-rcppparallel
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public |
High level functions for parallel programming with 'Rcpp'. For example, the 'parallelFor()' function can be used to convert the work of a standard serial "for" loop into a parallel one and the 'parallelReduce()' function can be used for accumulating aggregate or other values.
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2023-06-16 |
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multiqc-bcbio
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public |
MultiQC plugin for bcbio report visualization.
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2023-06-16 |
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gvcf-regions
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public |
Convert a gVCF file in multiple formats into a BED file of callable regions
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2023-06-16 |
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r-compquadform
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public |
Computes the distribution function of quadratic forms in normal variables using Imhof's method, Davies's algorithm, Farebrother's algorithm or Liu et al.'s algorithm.
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2023-06-16 |
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perl-aliased
|
public |
No Summary
|
2023-06-16 |
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metawatt
|
public |
No Summary
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2023-06-16 |
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cluster-picker
|
public |
No Summary
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2023-06-16 |
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dkfz-bias-filter
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public |
No Summary
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2023-06-16 |
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munkres
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public |
No Summary
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2023-06-16 |
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intemap
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public |
No Summary
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2023-06-16 |
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r-nastiseq
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public |
No Summary
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2023-06-16 |
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gdk-pixbuf
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public |
No Summary
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2023-06-16 |
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perl-math-combinatorics
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public |
No Summary
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2023-06-16 |
