| Package Name | Access | Summary | Updated |
|---|---|---|---|
| bioconductor-undo | public | Unsupervised Deconvolution of Tumor-Stromal Mixed Expressions | 2025-04-22 |
| bioconductor-translatome | public | Comparison between multiple levels of gene expression | 2025-04-22 |
| bioconductor-qpgraph | public | Estimation of genetic and molecular regulatory networks from high-throughput genomics data | 2025-04-22 |
| bioconductor-transcriptr | public | An Integrative Tool for ChIP- And RNA-Seq Based Primary Transcripts Detection and Quantification | 2025-04-22 |
| pirs | public | pIRS is a program for simulating Illumina PE reads. | 2025-04-22 |
| nvc | public | The Naive Variant Caller | 2025-04-22 |
| pybamtools | public | Tools for working on BAM data | 2025-04-22 |
| pybamparser | public | Tools for parsing BAM data | 2025-04-22 |
| codonw | public | CodonW is a programme designed to simplify the Multivariate analysis (correspondence analysis) of codon and amino acid usage. | 2025-04-22 |
| metacherchant | public | genomic environment analysis tool | 2025-04-22 |
| soapcoverage | public | SOAPcoverarge can calculate sequencing coverage or physical coverage as well as duplication rate and details of specific block for each segments and whole genome by using SOAP, BLAT, BLAST, BlastZ, mum- mer and MAQ aligement results with multi-thread. | 2025-04-22 |
| soapaligner | public | SOAPaligner/soap2 is an updated version of SOAP software for short oligonucleotide alignment. | 2025-04-22 |
| rapid | public | Read Alignment, Analysis, and Differential Pipeline (RAPID) is a set of tools for the alignment, and analysis of genomic regions with small RNA clusters derived from small RNA sequencing data. | 2025-04-22 |
| cistrome-ceas | public | Cistrome-CEAS -- Cis-regulatory Element Annotation System | 2025-04-22 |
| bioconductor-hapfabia | public | hapFabia: Identification of very short segments of identity by descent (IBD) characterized by rare variants in large sequencing data | 2025-04-22 |
| bioconductor-fabia | public | FABIA: Factor Analysis for Bicluster Acquisition | 2025-04-22 |
| bioconductor-scde | public | Single Cell Differential Expression | 2025-04-22 |
| treekin | public | Compute folding dynamics on coarse grained version of an energy landscape by numeric integration of a Markov process | 2025-04-22 |
| r-asics | public | With a set of pure metabolite spectra, ASICS quantifies metabolites concentration in a complex spectrum. The identification of metabolites is performed by fitting a mixture model to the spectra of the library with a sparse penalty. The method and its statistical properties are described in Tardivel et al. (2017) <doi:10.1007/s11306-017-1244-5>. | 2025-04-22 |
| bis-snp | public | Bisulfite-seq/NOMe-seq SNPs & cytosine methylation caller | 2025-04-22 |
| perl-file-share | public | Extend File::ShareDir to Local Libraries | 2025-04-22 |
| perl-test-file-contents | public | Test routines for examining the contents of files | 2025-04-22 |
| bioconductor-flowq | public | Provides quality control and quality assessment tools for flow cytometry data. | 2025-04-22 |
| perl-test-prereq | public | check if Makefile.PL has the right pre-requisites | 2025-04-22 |
| perl-module-extract-use | public | Pull out the modules a module explicitly uses | 2025-04-22 |
