| Package Name | Access | Summary | Updated |
|---|---|---|---|
| stream_atac | public | STREAM-Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data. Preprocessing steps for single cell atac-seq data. | 2025-04-22 |
| plantcv | public | An image processing package for plant phenotyping. | 2025-04-22 |
| perl-probe-perl | public | Information about the currently running perl | 2025-04-22 |
| cgat-apps | public | Computational Genomics Analysis Toolkit. | 2025-04-22 |
| ivar | public | iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing. | 2025-04-22 |
| sbg-cwl-runner | public | A CWL Runner for SBG platform | 2025-04-22 |
| refinem | public | A toolbox for improving population genomes. | 2025-04-22 |
| epa-ng | public | Massively parallel phylogenetic placement of genetic sequences | 2025-04-22 |
| nullarbor | public | Reads to report pipeline for bacterial isolate NGS data | 2025-04-22 |
| r-rrbgen | public | A lightweight limited functionality R bgen read/write library | 2025-04-22 |
| sample-sheet | public | An Illumina Sample Sheet parsing library | 2025-04-22 |
| seqlogo | public | Python port of the R Bioconductor `seqlogo` package | 2025-04-22 |
| nemo | public | Individual-based forward-time genetics simulation software | 2025-04-22 |
| goslimmer | public | GOSlimmer transforms GO annotations to a slimmed version of GO | 2025-04-22 |
| goenrichment | public | GOEnrichment analyses a set of gene products for GO term enrichment | 2025-04-22 |
| perl-text-template-simple | public | Simple text template engine | 2025-04-22 |
| matlock | public | Simple tools for working with Hi-C data | 2025-04-22 |
| scaffold_builder | public | Scaffold_builder: Combining de novo and reference-guided assembly with Scaffold_builder. | 2025-04-22 |
| perl-bio-rna-rnaalisplit | public | Split and deconvolute structural RNA multiple sequence alignments | 2025-04-22 |
| perl-array-set | public | Perform set operations on arrays | 2025-04-22 |
| anise_basil | public | BASIL is a method to detect breakpoints for structural variants (including insertion breakpoints) from aligned paired HTS reads in BAM format. ANISE is a method for the assembly of large insertions from paired reads in BAM format and a list candidate insert breakpoints as generated by BASIL. | 2025-04-22 |
| bcool | public | BCOOL is a read corrector for NGS sequencing data that align reads on a de Bruijn graph. Version described at (https://arxiv.org/abs/1711.03336) presented at RECOMB-seq 2018 | 2025-04-22 |
| fastsimbac | public | Models bacterial recombination | 2025-04-22 |
| cromshell | public | Command-line interface to the Cromwell workflow manager | 2025-04-22 |
| cnv_facets | public | Detect somatic copy number variants (CNV) in tumour-normal samples using next generation sequencing data | 2025-04-22 |
