|
kaiju
|
public |
Fast and sensitive taxonomic classification for metagenomics
|
2024-12-13 |
|
r-rubic
|
public |
No Summary
|
2024-12-13 |
|
smhasher
|
public |
No Summary
|
2024-12-13 |
|
ucsc-chromgraphtobin
|
public |
Make binary version of chromGraph.
|
2024-12-13 |
|
ucsc-chainprenet
|
public |
Remove chains that don't have a chance of being netted
|
2024-12-13 |
|
zerone
|
public |
Zerone discretizes several ChIP-seq replicates simultaneously and resolves conflicts between them.
|
2024-12-13 |
|
perl-math-cdf
|
public |
Generate probabilities and quantiles from several statistical probability functions
|
2024-12-13 |
|
takeabreak
|
public |
tool that can detect inversion breakpoints directly from raw NGS reads, without the need of any reference genome and without de novo assembling the genomes
|
2024-12-13 |
|
ucsc-chainfilter
|
public |
Filter chain files. Output goes to standard out.
|
2024-12-13 |
|
groot
|
public |
A tool for resistome profiling of metagenomic samples.
|
2024-12-13 |
|
prodigal
|
public |
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program
|
2024-12-13 |
|
ucsc-wigtobigwig
|
public |
Convert ascii format wig file (in fixedStep, variableStep).
|
2024-12-13 |
|
pytabix
|
public |
Fast random access to sorted files compressed with bgzip and indexed by tabix.
|
2024-12-13 |
|
ucsc-bigwigsummary
|
public |
Extract summary information from a bigWig file.
|
2024-12-13 |
|
ucsc-psldropoverlap
|
public |
deletes all overlapping self alignments.
|
2024-12-13 |
|
clustalw
|
public |
No Summary
|
2024-12-13 |
|
ucsc-oligomatch
|
public |
find perfect matches in sequence.
|
2024-12-13 |
|
nonpareil
|
public |
Estimate average coverage and create curves for metagenomic datasets
|
2024-12-13 |
|
selscan
|
public |
a program to calculate EHH-based scans for positive selection in genomes
|
2024-12-13 |
|
ucsc-findmotif
|
public |
find specified motif in sequence
|
2024-12-13 |
|
ucsc-chaintoaxt
|
public |
Convert from chain to axt file
|
2024-12-13 |
|
swarm
|
public |
A robust and fast clustering method for amplicon-based studies.
|
2024-12-13 |
|
dsk
|
public |
DSK is a k-mer counter for reads or genomes.
|
2024-12-13 |
|
ucsc-psltochain
|
public |
Convert psl records to chain records
|
2024-12-13 |
|
cd-hit
|
public |
Clusters and compares protein or nucleotide sequences
|
2024-12-13 |
|
mvicuna
|
public |
M-Vicuna is a modularized version of VICUNA, a de novo assembly program targeting populations with high mutation rates
|
2024-12-13 |
|
sparc
|
public |
No Summary
|
2024-12-13 |
|
verse
|
public |
VERSE: a versatile and efficient RNA-Seq read counting tool
|
2024-12-13 |
|
lordfast
|
public |
Sensitive and Fast Alignment Search Tool for Long Read sequencing Data
|
2024-12-13 |
|
ucsc-tolower
|
public |
Convert upper case to lower case in file. Leave other chars alone
|
2024-12-13 |
|
anise_basil
|
public |
BASIL is a method to detect breakpoints for structural variants (including insertion breakpoints) from aligned paired HTS reads in BAM format. ANISE is a method for the assembly of large insertions from paired reads in BAM format and a list candidate insert breakpoints as generated by BASIL.
|
2024-12-13 |
|
mapdia
|
public |
Performs essential data preprocessing, including novel retention time-based normalization method and a sequence of peptide/fragment selection steps, and more importantly, hierarchical model-based statistical significance analysis for multi-group comparisons under representative experimental designs.
|
2024-12-13 |
|
red
|
public |
Red (RepeatsDetector): an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.
|
2024-12-13 |
|
hapbin
|
public |
hapbin is a collection of tools for efficiently calculating Extended Haplotype Homozygosity (EHH), the Integrated Haplotype Score (iHS) and the Cross Population Extended Haplotype Homozogysity (XP-EHH) statistic.
|
2024-12-13 |
|
ucsc-addcols
|
public |
Sum columns in a text file.
|
2024-12-13 |
|
ucsc-avecols
|
public |
average together columns
|
2024-12-13 |
|
ucsc-chainsplit
|
public |
Split chains up by target or query sequence
|
2024-12-13 |
|
ucsc-fapolyasizes
|
public |
get poly A sizes
|
2024-12-13 |
|
rust-ncbitaxonomy
|
public |
A Rust crate for working with a local copy of the NCBI Taxonomy database, which provides utilities for taxonomic filtering.
|
2024-12-13 |
|
ucsc-hgbbidblink
|
public |
Add table that just contains a pointer to a bbiFile to database. This program
|
2024-12-13 |
|
ucsc-mktime
|
public |
convert date string to unix timestamp
|
2024-12-13 |
|
trimal
|
public |
A tool for the automated removal of spurious sequences or poorly aligned regions from a multiple sequence alignment
|
2024-12-13 |
|
racon
|
public |
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads.
|
2024-12-13 |
|
r-xmlrpc
|
public |
A simple implementation of XML-RPC for R.
|
2024-12-13 |
|
ucsc-pslswap
|
public |
Swap target and query in psls
|
2024-12-13 |
|
ucsc-ratotab
|
public |
Convert ra file to table.
|
2024-12-13 |
|
ucsc-fetchchromsizes
|
public |
used to fetch chrom.sizes information from UCSC for the given <db>
|
2024-12-13 |
|
ucsc-nibsize
|
public |
print size of nibs
|
2024-12-13 |
|
libbigwig
|
public |
A C library for handling bigWig files
|
2024-12-13 |
|
hmmer
|
public |
Biosequence analysis using profile hidden Markov models
|
2024-12-13 |
