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bioconductor-ebseq
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public |
An R package for gene and isoform differential expression analysis of RNA-seq data
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2024-12-14 |
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bioconductor-lpsymphony
|
public |
Symphony integer linear programming solver in R
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2024-12-14 |
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bioconductor-survcomp
|
public |
Performance Assessment and Comparison for Survival Analysis
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2024-12-14 |
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bioconductor-snm
|
public |
Supervised Normalization of Microarrays
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2024-12-14 |
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bioconductor-mpfe
|
public |
Estimation of the amplicon methylation pattern distribution from bisulphite sequencing data
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2024-12-14 |
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bioconductor-asgsca
|
public |
Association Studies for multiple SNPs and multiple traits using Generalized Structured Equation Models
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2024-12-14 |
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perl-algorithm-cluster
|
public |
Perl interface to the C Clustering Library
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2024-12-14 |
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suma_package
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public |
Fast and exact comparison of sequences
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2024-12-14 |
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bioconductor-demand
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public |
DeMAND
|
2024-12-14 |
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grabix
|
public |
a wee tool for random access into BGZF files.
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2024-12-14 |
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bioconductor-semisup
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public |
Semi-Supervised Mixture Model
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2024-12-14 |
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bioconductor-ntw
|
public |
Predict gene network using an Ordinary Differential Equation (ODE) based method
|
2024-12-14 |
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bioconductor-synergyfinder
|
public |
Calculate and Visualize Synergy Scores for Drug Combinations
|
2024-12-14 |
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bioconductor-biocgenerics
|
public |
S4 generic functions used in Bioconductor
|
2024-12-14 |
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idba
|
public |
IDBA-UD is a iterative De Bruijn Graph De Novo Assembler for Short Reads Sequencing data with Highly Uneven Sequencing Depth.
|
2024-12-14 |
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ngs-disambiguate
|
public |
Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem
|
2024-12-14 |
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bioconductor-rnaseqpower
|
public |
Sample size for RNAseq studies
|
2024-12-14 |
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bioconductor-gpls
|
public |
Classification using generalized partial least squares
|
2024-12-14 |
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scalpel
|
public |
Sensitive detection of INDELs (INsertions and DELetions)
|
2024-12-14 |
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bioconductor-metahdep
|
public |
Hierarchical Dependence in Meta-Analysis
|
2024-12-14 |
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bioconductor-mantelcorr
|
public |
Compute Mantel Cluster Correlations
|
2024-12-14 |
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paml
|
public |
A package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood.
|
2024-12-14 |
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bioconductor-sizepower
|
public |
Sample Size and Power Calculation in Micorarray Studies
|
2024-12-14 |
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ucsc-blasttopsl
|
public |
Convert blast alignments to PSLs.
|
2024-12-14 |
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bioconductor-empiricalbrownsmethod
|
public |
Uses Brown's method to combine p-values from dependent tests
|
2024-12-14 |
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gem3-mapper
|
public |
The GEM read mapper (v3).
|
2024-12-14 |
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ucsc-xmlcat
|
public |
Concatenate xml files together, stuffing all records inside a single outer tag.
|
2024-12-14 |
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bioconductor-macorrplot
|
public |
Visualize artificial correlation in microarray data
|
2024-12-14 |
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perl-indirect
|
public |
Lexically warn about using the indirect method call syntax.
|
2024-12-14 |
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bioconductor-treeio
|
public |
Base Classes and Functions for Phylogenetic Tree Input and Output
|
2024-12-14 |
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ucsc-splitfile
|
public |
Split up a file
|
2024-12-14 |
|
bioconductor-agilp
|
public |
Agilent expression array processing package
|
2024-12-14 |
|
bioconductor-specl
|
public |
specL - Prepare Peptide Spectrum Matches for Use in Targeted Proteomics
|
2024-12-14 |
|
bioconductor-rimmport
|
public |
RImmPort: Enabling Ready-for-analysis Immunology Research Data
|
2024-12-14 |
|
bioconductor-multimed
|
public |
Testing multiple biological mediators simultaneously
|
2024-12-14 |
|
bioconductor-clustcomp
|
public |
Clustering Comparison Package
|
2024-12-14 |
|
bioconductor-stringdb
|
public |
STRINGdb - Protein-Protein Interaction Networks and Functional Enrichment Analysis
|
2024-12-14 |
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bgreat
|
public |
BGREAT2 is a read mapping tool for NGS sequencing data that align reads on a de Bruijn graph. Preliminary version described at https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1103-9 and used in Bcool a short read corrector (https://arxiv.org/abs/1711.03336)
|
2024-12-14 |
|
bioconductor-pmm
|
public |
Parallel Mixed Model
|
2024-12-14 |
|
bioconductor-asafe
|
public |
Ancestry Specific Allele Frequency Estimation
|
2024-12-14 |
|
bioconductor-mbttest
|
public |
Multiple Beta t-Tests
|
2024-12-14 |
|
bioconductor-qvalue
|
public |
Q-value estimation for false discovery rate control
|
2024-12-14 |
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bioconductor-chicago
|
public |
CHiCAGO: Capture Hi-C Analysis of Genomic Organization
|
2024-12-14 |
|
bioconductor-targetscore
|
public |
TargetScore: Infer microRNA targets using microRNA-overexpression data and sequence information
|
2024-12-14 |
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perl-json-parse
|
public |
Read JSON into a Perl variable
|
2024-12-14 |
|
perl-forks
|
public |
drop-in replacement for Perl threads using fork()
|
2024-12-14 |
|
cage
|
public |
Changepoint Analysis for Efficient Variant Calling
|
2024-12-14 |
|
python-hppy
|
public |
An intuitive HyPhy interface for Python
|
2024-12-14 |
|
vphaser2
|
public |
V-Phaser 2 is a tool to call variants in genetically heterogeneous populations from ultra-deep sequence data
|
2024-12-14 |
|
sga
|
public |
SGA - String Graph Assembler. SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.
|
2024-12-14 |
