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bioconductor-flowsom
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public |
Using self-organizing maps for visualization and interpretation of cytometry data
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2025-01-03 |
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bioconductor-cnvpanelizer
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public |
Reliable CNV detection in targeted sequencing applications
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2025-01-03 |
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bioconductor-drugvsdisease
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public |
Comparison of disease and drug profiles using Gene set Enrichment Analysis
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2025-01-03 |
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bioconductor-eudysbiome
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public |
Cartesian plot and contingency test on 16S Microbial data
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2025-01-03 |
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bioconductor-generegionscan
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public |
GeneRegionScan
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2025-01-03 |
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bioconductor-flowfp
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public |
Fingerprinting for Flow Cytometry
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2025-01-03 |
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bioconductor-flowmatch
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public |
Matching and meta-clustering in flow cytometry
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2025-01-03 |
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bioconductor-affyilm
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public |
Linear Model of background subtraction and the Langmuir isotherm
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2025-01-03 |
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chromhmm
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public |
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial patterns of marks.
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2025-01-03 |
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perl-mce
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public |
Many-Core Engine for Perl providing parallel processing capabilities
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2025-01-03 |
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bioconductor-flowworkspace
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public |
Infrastructure for representing and interacting with gated and ungated cytometry data sets.
|
2025-01-03 |
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perl-bio-db-hts
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public |
Read files using HTSlib including BAM/CRAM, Tabix and BCF database files
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2025-01-02 |
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bioconductor-ncdfflow
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public |
ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.
|
2025-01-02 |
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bioconductor-flowcore
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public |
flowCore: Basic structures for flow cytometry data
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2025-01-02 |
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pybedtools
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public |
Wraps BEDTools for use in Python and adds many additional features.
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2025-01-02 |
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somaticseq
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public |
An ensemble approach to accurately detect somatic mutations.
|
2025-01-02 |
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bioconductor-deepsnv
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public |
Detection of subclonal SNVs in deep sequencing data.
|
2025-01-02 |
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bioconductor-quasr
|
public |
Quantify and Annotate Short Reads in R
|
2025-01-02 |
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bioconductor-ffpe
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public |
Quality assessment and control for FFPE microarray expression data
|
2025-01-01 |
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bioconductor-watermelon
|
public |
Illumina DNA methylation array normalization and metrics
|
2025-01-01 |
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bioconductor-recount
|
public |
Explore and download data from the recount project
|
2025-01-01 |
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bioconductor-rnbeads
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public |
RnBeads
|
2025-01-01 |
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bioconductor-lumi
|
public |
BeadArray Specific Methods for Illumina Methylation and Expression Microarrays
|
2025-01-01 |
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bioconductor-derfinderplot
|
public |
Plotting functions for derfinder
|
2025-01-01 |
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gridss
|
public |
GRIDSS: the Genomic Rearrangement IDentification Software Suite
|
2025-01-01 |
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bioconductor-yarn
|
public |
YARN: Robust Multi-Condition RNA-Seq Preprocessing and Normalization
|
2025-01-01 |
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bioconductor-bubbletree
|
public |
BubbleTree: an intuitive visualization to elucidate tumoral aneuploidy and clonality in somatic mosaicism using next generation sequencing data
|
2025-01-01 |
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bioconductor-derfinder
|
public |
Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach
|
2025-01-01 |
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bioconductor-minimumdistance
|
public |
A Package for De Novo CNV Detection in Case-Parent Trios
|
2025-01-01 |
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bioconductor-chipqc
|
public |
Quality metrics for ChIPseq data
|
2025-01-01 |
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bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19
|
public |
An annotation package for Illumina's EPIC methylation arrays.
|
2025-01-01 |
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bioconductor-quantro
|
public |
A test for when to use quantile normalization
|
2025-01-01 |
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bioconductor-methylumi
|
public |
Handle Illumina methylation data
|
2025-01-01 |
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bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19
|
public |
An annotation package for Illumina's EPIC methylation arrays.
|
2025-01-01 |
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bioconductor-illuminahumanmethylationepicmanifest
|
public |
A manifest package for Illumina's EPIC methylation arrays.
|
2025-01-01 |
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bioconductor-nadfinder
|
public |
Call wide peaks for sequencing data
|
2025-01-01 |
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bioconductor-diffbind
|
public |
Differential Binding Analysis of ChIP-Seq Peak Data
|
2025-01-01 |
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bioconductor-atacseqqc
|
public |
ATAC-seq Quality Control
|
2025-01-01 |
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bioconductor-illuminahumanmethylationepicanno.ilm10b3.hg19
|
public |
An annotation package for Illumina's EPIC methylation arrays.
|
2025-01-01 |
|
bioconductor-shinymethyl
|
public |
Interactive visualization for Illumina methylation arrays
|
2025-01-01 |
|
bioconductor-flowsorted.blood.450k
|
public |
Illumina HumanMethylation data on sorted blood cell populations
|
2025-01-01 |
|
bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19
|
public |
Annotation for Illumina's 450k methylation arrays
|
2025-01-01 |
|
bioconductor-illuminahumanmethylation450kmanifest
|
public |
Manifest for Illumina's 450k array data
|
2025-01-01 |
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bioconductor-prolocgui
|
public |
Interactive visualisation of spatial proteomics data
|
2025-01-01 |
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r-cate
|
public |
Provides several methods for factor analysis in high dimension (both n,p >> 1) and methods to adjust for possible confounders in multiple hypothesis testing.
|
2025-01-01 |
|
bioconductor-motifstack
|
public |
Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
|
2024-12-31 |
|
bioconductor-chromvar
|
public |
Chromatin Variation Across Regions
|
2024-12-31 |
|
r-deconstructsigs
|
public |
Takes sample information in the form of the fraction of mutations in each of 96 trinucleotide contexts and identifies the weighted combination of published signatures that, when summed, most closely reconstructs the mutational profile.
|
2024-12-31 |
|
bioconductor-chipcomp
|
public |
Quantitative comparison of multiple ChIP-seq datasets
|
2024-12-31 |
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bioconductor-codex
|
public |
A Normalization and Copy Number Variation Detection Method for Whole Exome Sequencing
|
2024-12-31 |
