| Package Name | Access | Summary | Updated |
|---|---|---|---|
| ucsc-maftopsl | public | Convert maf to psl format. | 2025-06-29 |
| ucsc-mafmefirst | public | Move component to top if it is one of the named ones. | 2025-06-29 |
| ucsc-qatoqac | public | Convert from uncompressed to compressed. | 2025-06-29 |
| ucsc-genepredfilter | public | Filter a genePred file. | 2025-06-29 |
| ucsc-qactoqa | public | Convert from compressed to uncompressed. | 2025-06-29 |
| ucsc-linestora | public | Generate .ra format from lines with pipe-separated fields. | 2025-06-29 |
| ucsc-hgfakeagp | public | Create fake AGP file by looking at N's. | 2025-06-29 |
| ucsc-parasync | public | Uses paraFetch to recursively mirror url to given path. | 2025-06-29 |
| ucsc-coltransform | public | Add and/or multiply column by constant. | 2025-06-29 |
| ucsc-fastqstatsandsubsample | public | Go through a fastq file doing sanity checks and collecting stats. | 2025-06-29 |
| ucsc-sqltoxml | public | Dump out all or part of a relational database to XML, guided. | 2025-06-29 |
| ucsc-htmlcheck | public | Do a little reading and verification of html file. | 2025-06-29 |
| ucsc-mktime | public | Convert date string to unix timestamp. | 2025-06-29 |
| ucsc-mafaddirows | public | Add 'i' rows to a maf. | 2025-06-29 |
| ucsc-crtreesearchbed | public | Search a crTree indexed bed file and print all items that overlap query. | 2025-06-29 |
| ucsc-hgbbidblink | public | Add table that just contains a pointer to a bbiFile to database. This program. | 2025-06-29 |
| ucsc-dbtrash | public | Drop tables from a database older than specified N hours. | 2025-06-29 |
| ucsc-netsplit | public | Split a genome net file into chromosome net files. | 2025-06-29 |
| ucsc-mafaddqrows | public | Add quality data to a maf. | 2025-06-29 |
| ucsc-fastqtofa | public | Convert from fastq to fasta format. | 2025-06-29 |
| ucsc-crtreeindexbed | public | Create an index for a bed file. | 2025-06-29 |
| ucsc-liftup | public | Change coordinates of .psl, .agp, .gap, .gl, .out, .align, .gff, .gtf. | 2025-06-29 |
| ucsc-hgtrackdb | public | Create trackDb table from text files. | 2025-06-29 |
| ucsc-fafiltern | public | Get rid of sequences with too many N's. | 2025-06-29 |
| ucsc-rasqlquery | public | Do a SQL-like query on a RA file. | 2025-06-29 |
