| Package Name | Access | Summary | Updated |
|---|---|---|---|
| synapseclient | public | Python client for Synapse. | 2025-07-15 |
| r-rblast | public | Seamlessly interfaces the Basic Local Alignment Search Tool (BLAST) to search genetic sequence data bases. This work was partially supported by grant no. R21HG005912 from the National Human Genome Research Institute. | 2025-07-15 |
| ucsc-hgloadbed | public | Load a generic bed file into database. | 2025-07-15 |
| ucsc-hgspeciesrna | public | Create fasta file with RNA from one species. | 2025-07-15 |
| htslib | public | C library for high-throughput sequencing data formats. | 2025-07-14 |
| ucsc-paranodestatus | public | Check status of paraNode on a list of machines. | 2025-07-14 |
| ucsc-parahubstop | public | Shut down paraHub daemon. | 2025-07-14 |
| ucsc-paranode | public | Parasol node server. | 2025-07-14 |
| ucsc-paranodestop | public | Shut down parasol node daemons on a list of machines. | 2025-07-14 |
| ucsc-paranodestart | public | Start up parasol node daemons on a list of machines. | 2025-07-14 |
| ucsc-parasol | public | Parallel job management system for a compute cluster. | 2025-07-14 |
| ropebwt2 | public | Incremental construction of FM-index for DNA sequences | 2025-07-10 |
| gotree | public | gotree is a set of command line tools to manipulate phylogenetic trees. | 2025-07-09 |
| seqtk | public | Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format | 2025-07-09 |
| busco | public | Assessment of assembly completeness using Universal Single Copy Orthologs. | 2025-07-09 |
| perl-io-zlib | public | IO:: style interface to Compress::Zlib | 2025-07-09 |
| iqtree | public | Efficient phylogenomic software by maximum likelihood. | 2025-07-09 |
| admixtools | public | ADMIXTOOLS (Patterson et al. 2012) is a software package that supports formal tests of whether admixture occurred, and makes it possible to infer admixture proportions and dates. | 2025-07-09 |
| ngmlr | public | ngmlr is a long-read mapper designed to align PacBio or Oxford Nanopore reads to a reference genome and optimized for structural variation detection | 2025-07-08 |
| sniffles | public | Sniffles is a structural variation caller using third generation sequencing (PacBio or Oxford Nanopore). | 2025-07-08 |
| nf-core | public | Python package with helper tools for the nf-core community. | 2025-07-08 |
| snap | public | Semi-HMM-based Nucleic Acid Parser - a gene prediction tool. | 2025-07-08 |
| fqtools | public | An efficient FASTQ manipulation suite. | 2025-07-08 |
| exonerate | public | Exonerate - A generic tool for pairwise sequence comparison / alignment | 2025-07-08 |
| fwdpp | public | A C++ template library for forward-time population genetic simulation. | 2025-07-08 |
