|
ont-fast5-api
|
public |
Oxford Nanopore Technologies fast5 API software
|
2025-04-22 |
|
je-suite
|
public |
Je is a suite to handle barcoded fastq files with (or without) Unique Molecule Identifiers (UMIs) and filter
read duplicates using these UMIs
|
2025-04-22 |
|
bioconductor-consensusclusterplus
|
public |
ConsensusClusterPlus
|
2025-04-22 |
|
pauvre
|
public |
Tools for plotting Oxford Nanopore and other long-read data.
|
2025-04-22 |
|
nanosplit
|
public |
Perform splitting of Oxford Nanopore sequencing data in a fail and pass dataset.
|
2025-04-22 |
|
bioconductor-signer
|
public |
Empirical Bayesian approach to mutational signature discovery
|
2025-04-22 |
|
nanoplotter
|
public |
Plotting functions of Oxford Nanopore sequencing data for NanoPack
|
2025-04-22 |
|
plink
|
public |
Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner.
|
2025-04-22 |
|
nanofilt
|
public |
Filtering and trimming of Oxford Nanopore Sequencing data
|
2025-04-22 |
|
nanoqc
|
public |
Create fastQC-like plots for Oxford Nanopore sequencing data.
|
2025-04-22 |
|
embl-api-validator
|
public |
ENA flat file validator for submission
|
2025-04-22 |
|
nanostat
|
public |
Calculate statistics for Oxford Nanopore sequencing data and alignments
|
2025-04-22 |
|
nanoget
|
public |
Functions to extract information from Oxford Nanopore sequencing data and alignments.
|
2025-04-22 |
|
nanomath
|
public |
A few simple math function for other Oxford Nanopore processing scripts
|
2025-04-22 |
|
bioconductor-all
|
public |
A data package
|
2025-04-22 |
|
r-exactranktests
|
public |
Computes exact conditional p-values and quantiles using an implementation of the Shift-Algorithm by Streitberg & Roehmel.
|
2025-04-22 |
|
r-kmsurv
|
public |
Data sets and functions for Klein and Moeschberger (1997), "Survival Analysis, Techniques for Censored and Truncated Data", Springer.
|
2025-04-22 |
|
r-km.ci
|
public |
Computes various confidence intervals for the Kaplan-Meier estimator, namely Petos CI, Rothman CI, CI's based on Greenwoods variance, Thomas and Grunkemeier CI and the simultaneous confidence bands by Nair and Hall and Wellner.
|
2025-04-22 |
|
r-matlab
|
public |
Emulate MATLAB code using R.
|
2025-04-22 |
|
r-downloader
|
public |
Provides a wrapper for the download.file function, making it possible to download files over HTTPS on Windows, Mac OS X, and other Unix-like platforms. The RCurl package provides this functionality (and much more) but can be difficult to install because it must be compiled with external dependencies. This package has no external dependencies, so it is much easier to install.
|
2025-04-22 |
|
hera
|
public |
hera is a bioinformatics tool that helps analyze RNA-seq data, providing base-to-base alignment BAM files, transcript abundance estimation, and fusion gene detection.
|
2025-04-22 |
|
odose
|
public |
Ortholog Direction of Selection Engine.
|
2025-04-22 |
|
merlin
|
public |
MERLIN uses sparse trees to represent gene flow in pedigrees and is a fast pedigree analysis package
|
2025-04-22 |
|
spine
|
public |
Identification of conserved nucleotide core genome of bacteria and other small genome organisms
|
2025-04-22 |
|
r-extrafont
|
public |
Tools to using fonts other than the standard PostScript fonts. This package makes it easy to use system TrueType fonts and with PDF or PostScript output files, and with bitmap output files in Windows. extrafont can also be used with fonts packaged specifically to be used with, such as the fontcm package, which has Computer Modern PostScript fonts with math symbols. See https://github.com/wch/extrafont for instructions and examples.
|
2025-04-22 |
