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metacerberus-lite
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public |
MetaCerberus with reduced dependencies: Versatile Functional Ontology Assignments for Metagenomes via Hidden Markov Model (HMM) searching with environmental focus of shotgun meta'omics data
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2024-07-16 |
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strainr2
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public |
StrainR2 accurately deconvolutes strain-level abundances in synthetic microbial communities using metagenomic sequencing reads
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2024-07-16 |
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phylodm
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public |
Efficient calculation of phylogenetic distance matrices.
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2024-07-16 |
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r-stitch
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public |
STITCH - Sequencing To Imputation Through Constructing Haplotypes
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2024-07-16 |
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fgbio
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public |
A set of tools for working with genomic and high throughput sequencing data, including UMIs
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2024-07-16 |
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fgbio-minimal
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public |
A set of tools for working with genomic and high throughput sequencing data, including UMIs
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2024-07-16 |
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chewbbaca
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public |
A complete suite for gene-by-gene schema creation and strain identification.
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2024-07-16 |
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tobias
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public |
Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
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2024-07-16 |
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biobb_chemistry
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public |
Biobb_chemistry is the Biobb module collection to perform chemical conversions.
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2024-07-16 |
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pyhmmer
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public |
Cython bindings and Python interface to HMMER3.
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2024-07-16 |
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fastp
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public |
A ultra-fast FASTQ preprocessor with full features (QC/adapters/trimming/filtering/splitting...)
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2024-07-16 |
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orfanage
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public |
Ultra-efficient and sensitive method to search for ORFs in spliced genomes guided by reference annotation to maximize protein similarity within genes.
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2024-07-16 |
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libbigwig
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public |
A C library for handling bigWig files
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2024-07-16 |
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ucsc-tolower
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public |
Convert upper case to lower case in file. Leave other chars alone
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2024-07-16 |
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ucsc-xmlcat
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public |
Concatenate xml files together, stuffing all records inside a single outer tag.
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2024-07-16 |
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giatools
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public |
Tools required for Galaxy Image Analysis
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2024-07-16 |
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ucsc-nibfrag
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public |
Extract part of a nib file as .fa (all bases/gaps lower case by default)
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2024-07-16 |
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ucsc-pslsort
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public |
Merge and sort psCluster .psl output files
|
2024-07-16 |
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pytrf
|
public |
a fast Python package for finding tandem repeat sequences
|
2024-07-16 |
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pixelator
|
public |
A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) assays.
|
2024-07-16 |
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ensembl-utils
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public |
Ensembl Python general-purpose utils
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2024-07-16 |
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annonars
|
public |
Genome annotation based on Rust and RocksDB.
|
2024-07-16 |
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pia
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public |
PIA is a toolbox for MS based protein inference and identification analysis.
|
2024-07-16 |
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cadd-scripts
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public |
CADD scripts release for offline scoring
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2024-07-16 |
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pycomo
|
public |
PyCoMo is a software package for generating and analysing compartmentalized community metabolic models
|
2024-07-16 |
|
seismic-rna
|
public |
SEISMIC-RNA software by the Rouskin Lab
|
2024-07-16 |
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liftoff
|
public |
An accurate GFF3/GTF lift over pipeline
|
2024-07-16 |
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dajin2
|
public |
One-step genotyping tools for targeted long-read sequencing
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2024-07-16 |
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graftm
|
public |
GraftM is a pipeline used for identifying and classifying marker gene reads from metagenomic datasets
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2024-07-16 |
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r-spacexr
|
public |
Cell type identification and cell type-specific differential expression in spatial transcriptomics
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2024-07-16 |
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tides-ml
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public |
Tool for ORF-calling and ORF-classification using ML approaches
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2024-07-16 |
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bx-python
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public |
Tools for manipulating biological data, particularly multiple sequence alignments
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2024-07-16 |
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bioconda-repodata-patches
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public |
generate tweaks to index metadata, hosted separately from anaconda.org index
|
2024-07-16 |
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mappy
|
public |
Minimap2 Python binding
|
2024-07-15 |
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bellmans-gapc
|
public |
A language and compiler for algebraic dynamic programming.
|
2024-07-15 |
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gtdb_to_taxdump
|
public |
GTDB database utility scripts
|
2024-07-15 |
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nanomotif
|
public |
Identifying methlyation motifs in nanopore data
|
2024-07-15 |
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pbstarphase
|
public |
A phase-aware pharmacogenomic diplotyper for PacBio sequencing data
|
2024-07-15 |
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illumina-interop
|
public |
The Illumina InterOp libraries are a set of common routines used for reading and writing InterOp metric files. These metric files are binary files produced during a run providing detailed statistics about a run. In a few cases, the metric files are produced after a run during secondary analysis (index metrics) or for faster display of a subset of the original data (collapsed quality scores).
|
2024-07-15 |
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augur
|
public |
Process pathogen genome data for the Nextstrain platform
|
2024-07-15 |
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mycotools
|
public |
Comparative genomics automation and standardization software
|
2024-07-15 |
|
bioconductor-maaslin2
|
public |
"Multivariable Association Discovery in Population-scale Meta-omics Studies"
|
2024-07-15 |
|
dropseq_tools
|
public |
Package for the analysis of Drop-seq data developed by Jim Nemesh in the McCarroll Lab
|
2024-07-15 |
|
influx-si-data-manager
|
public |
Data manager for handling influx_si inputs on Workflow4Metabolomics (usegalaxy.org)
|
2024-07-15 |
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egglib
|
public |
Evolutionary Genetics and Genomics Library. EggLib is a C++/Python library and program package for evolutionary genetics and genomics. Main features are sequence data management, sequence polymorphism analysis, and coalescent simulations. EggLib is a flexible Python module with a performant underlying C++ library and allows fast and intuitive development of Python programs and scripts.
|
2024-07-15 |
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earlgrey
|
public |
Earl Grey: A fully automated TE curation and annotation pipeline
|
2024-07-15 |
|
architeuthis
|
public |
Tool to analyze and summarize data for Kraken.
|
2024-07-15 |
|
r-rrbgen
|
public |
A lightweight limited functionality R bgen read/write library
|
2024-07-15 |
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knotinframe
|
public |
Predicts -1 frameshift sites with simple pseudoknots
|
2024-07-15 |
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viguno
|
public |
Lookup OMIM genes and HPO terms and compute similarities
|
2024-07-15 |
