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libdivsufsort
|
public |
No Summary
|
2024-12-13 |
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2pg_cartesian
|
public |
2pg cartesian is a framework of optimization algorithms for protein structure prediction.
|
2024-12-13 |
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naf
|
public |
Compressed binary file format for DNA/RNA/protein sequence data
|
2024-12-13 |
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r-mmcpcounter
|
public |
Murine version of MCP-counter, a tool to estimate the immune and stromal composition of heterogeneous tissue, from transcriptomic data
|
2024-12-13 |
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r-r0
|
public |
Estimation of R0 and Real-Time Reproduction Number from Epidemics.
|
2024-12-13 |
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revoluzer
|
public |
Genome rearrangement analysis tools
|
2024-12-13 |
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pretextsnapshot
|
public |
Commandline image generator for Pretext Hi-C genome contact maps.
|
2024-12-13 |
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ucsc-paranodestart
|
public |
version 12.18
|
2024-12-13 |
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karect
|
public |
Read error correction tool based on multiple alignment.
|
2024-12-13 |
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allegro
|
public |
A fast linkage and haplotype analysis utility making use of MTBDD to reduce complexity.
|
2024-12-13 |
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unimap
|
public |
Unimap is a fork of minimap2 optimized for assembly-to-reference alignment.
|
2024-12-13 |
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gwama
|
public |
Genome-Wide Association Meta Analysis
|
2024-12-13 |
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fwdpy11
|
public |
Forward-time population genetic simulation in Python.
|
2024-12-13 |
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psass
|
public |
Comparison of pooled-sequencing data for two populations
|
2024-12-13 |
|
pandora
|
public |
Pan-genome inference and genotyping with long noisy or short accurate reads
|
2024-12-13 |
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veryfasttree
|
public |
VeryFastTree -- speeding up the estimation of phylogenies for large alignments through parallelization and vectorization strategies.
|
2024-12-13 |
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r-presto
|
public |
Scalable implementation of the Wilcoxon rank sum test and auROC statistic. Interfaces to dense and sparse matrices, as well as genomics analysis frameworks Seurat and SingleCellExperiment.
|
2024-12-13 |
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digestiflow-cli
|
public |
Command line client for Digestiflow.
|
2024-12-13 |
|
gxf2chrom
|
public |
Everything in .chrom from GTF/GFF
|
2024-12-13 |
|
lrge
|
public |
Genome size estimation from long read overlaps
|
2024-12-13 |
|
usalign
|
public |
Universal structure alignment of monomeric, complex proteins and nucleic acids
|
2024-12-13 |
|
rgccacmd
|
public |
Multiblock data analysis concerns the analysis of several sets of variables (blocks) observed on the same group of individuals. The main aims of the RGCCA package are (i) to study the relationships between blocks and (ii) to identify subsets of variables of each block which are active in their relationships with the other blocks.
|
2024-12-13 |
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pgma-simple
|
public |
No Summary
|
2024-12-13 |
|
r-lymphclon
|
public |
We provide a clonality score estimator that takes full advantage of the multi-biological-replicate structure of modern sequencing experiments; it specifically takes into account the reality that, typically, the clonal coverage is well below 0.1%.
|
2024-12-13 |
|
ucsc-bedweedoverlapping
|
public |
Filter out beds that overlap a 'weed.bed' file.
|
2024-12-13 |
|
meryl
|
public |
No Summary
|
2024-12-13 |
|
mmannot
|
public |
mmannot annotates reads, or quantifies the features. mmmannot takes special care of multi-mapping reads.
|
2024-12-13 |
|
pretextgraph
|
public |
Embeds bedgraph data into Pretext contact maps.
|
2024-12-13 |
|
ska
|
public |
SKA (Split Kmer Analysis)
|
2024-12-13 |
|
coils
|
public |
A generalized profile syntax for biomolecular sequence motifs and its function in automatic sequence interpretation.
|
2024-12-13 |
|
ucsc-dbsnoop
|
public |
Produce an overview of a database.
|
2024-12-13 |
|
fmlrc
|
public |
A long-read error correction tool using the multi-string Burrows Wheeler Transform
|
2024-12-13 |
|
estscan
|
public |
No Summary
|
2024-12-13 |
|
get_orfs
|
public |
Fast extraction of ORFs in all possible translation tables
|
2024-12-13 |
|
ucsc-linestora
|
public |
generate .ra format from lines with pipe-separated fields
|
2024-12-13 |
|
phynder
|
public |
Efficient likelihood calculations to place samples into a phylogenetic tree.
|
2024-12-13 |
|
ucsc-stringify
|
public |
Convert file to C strings.
|
2024-12-13 |
|
vdjer
|
public |
B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data
|
2024-12-13 |
|
perl-socket6
|
public |
IPv6 related part of the C socket.h defines and structure manipulators
|
2024-12-13 |
|
ucsc-bigpsltopsl
|
public |
convert bigPsl file to psl
|
2024-12-13 |
|
w4mclassfilter
|
public |
Filter Workflow4Metabolomics feature list, optionally imputing NA values.
|
2024-12-13 |
|
sctools
|
public |
SCTools is a suite of tools performing utility operations over single-cell samples
|
2024-12-13 |
|
popgen-entropy
|
public |
This program is for inferring population structure from autopolyploid and mixed-ploidy individuals, similar to structure, but using genotype-likelihood data for low- to medium-coverage sequencing depth.
|
2024-12-13 |
|
selectfasta
|
public |
FASTA or FASTQ select from a list of header names
|
2024-12-13 |
|
vcf-validator
|
public |
EBI EVA - Validation tool for VCF file format compliance
|
2024-12-13 |
|
perl-digest-crc
|
public |
Generic CRC functions
|
2024-12-13 |
|
ucsc-wigcorrelate
|
public |
Produce a table that correlates all pairs of wigs.
|
2024-12-13 |
|
genodsp
|
public |
General workbench for processing signals along genomic (chromosomal) intervals
|
2024-12-13 |
|
perl-perl-unsafe-signals
|
public |
Allow unsafe handling of signals in selected blocks
|
2024-12-13 |
|
ucsc-hgfindspec
|
public |
Create hgFindSpec table from trackDb.ra files.
|
2024-12-13 |
