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bioconductor-geofastq
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public |
Downloads ENA Fastqs With GEO Accessions
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2024-12-14 |
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suma_package
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public |
Fast and exact comparison of sequences
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2024-12-14 |
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bioconductor-demand
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public |
DeMAND
|
2024-12-14 |
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bioconductor-igc
|
public |
An integrated analysis package of Gene expression and Copy number alteration
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2024-12-14 |
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bioconductor-clusterjudge
|
public |
Judging Quality of Clustering Methods using Mutual Information
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2024-12-14 |
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grabix
|
public |
a wee tool for random access into BGZF files.
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2024-12-14 |
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bioconductor-semisup
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public |
Semi-Supervised Mixture Model
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2024-12-14 |
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bioconductor-ntw
|
public |
Predict gene network using an Ordinary Differential Equation (ODE) based method
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2024-12-14 |
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bioconductor-synergyfinder
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public |
Calculate and Visualize Synergy Scores for Drug Combinations
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2024-12-14 |
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idba
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public |
IDBA-UD is a iterative De Bruijn Graph De Novo Assembler for Short Reads Sequencing data with Highly Uneven Sequencing Depth.
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2024-12-14 |
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ngs-disambiguate
|
public |
Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem
|
2024-12-14 |
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bioconductor-consensus
|
public |
Cross-platform consensus analysis of genomic measurements via interlaboratory testing method
|
2024-12-14 |
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bioconductor-shiny.gosling
|
public |
A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization for R and Shiny
|
2024-12-14 |
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idemuxcpp
|
public |
A Lexogen tool for demultiplexing and index error correcting fastq files. Works with Lexogen i7, i5 and i1 barcodes.
|
2024-12-14 |
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bioconductor-smad
|
public |
Statistical Modelling of AP-MS Data (SMAD)
|
2024-12-14 |
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bioconductor-rnaseqpower
|
public |
Sample size for RNAseq studies
|
2024-12-14 |
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bioconductor-gpls
|
public |
Classification using generalized partial least squares
|
2024-12-14 |
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scalpel
|
public |
Sensitive detection of INDELs (INsertions and DELetions)
|
2024-12-14 |
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bioconductor-metahdep
|
public |
Hierarchical Dependence in Meta-Analysis
|
2024-12-14 |
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bioconductor-mantelcorr
|
public |
Compute Mantel Cluster Correlations
|
2024-12-14 |
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bioconductor-bridgedbr
|
public |
Code for using BridgeDb identifier mapping framework from within R
|
2024-12-14 |
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bioconductor-bg2
|
public |
Performs Bayesian GWAS analysis for non-Gaussian data using BG2
|
2024-12-14 |
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covtobed
|
public |
covtobed - generate a BED file of covered regions from a BAM file
|
2024-12-14 |
|
bioconductor-geneticsped
|
public |
Pedigree and genetic relationship functions
|
2024-12-14 |
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paml
|
public |
A package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood.
|
2024-12-14 |
|
macs3
|
public |
Model Based Analysis for ChIP-Seq data.
|
2024-12-14 |
|
bioconductor-sizepower
|
public |
Sample Size and Power Calculation in Micorarray Studies
|
2024-12-14 |
|
tpmcalculator
|
public |
TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files.
|
2024-12-14 |
|
ucsc-blasttopsl
|
public |
Convert blast alignments to PSLs.
|
2024-12-14 |
|
bioconductor-empiricalbrownsmethod
|
public |
Uses Brown's method to combine p-values from dependent tests
|
2024-12-14 |
|
gem3-mapper
|
public |
The GEM read mapper (v3).
|
2024-12-14 |
|
bioconductor-podcall
|
public |
Positive Droplet Calling for DNA Methylation Droplet Digital PCR
|
2024-12-14 |
|
bioconductor-modcon
|
public |
Modifying splice site usage by changing the mRNP code, while maintaining the genetic code
|
2024-12-14 |
|
bioconductor-compspot
|
public |
compSPOT: Tool for identifying and comparing significantly mutated genomic hotspots
|
2024-12-14 |
|
bioconductor-flowgraph
|
public |
Identifying differential cell populations in flow cytometry data accounting for marker frequency
|
2024-12-14 |
|
bioconductor-granulator
|
public |
Rapid benchmarking of methods for *in silico* deconvolution of bulk RNA-seq data
|
2024-12-14 |
|
decifer
|
public |
DeCiFer simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell fractions (DCF)
|
2024-12-14 |
|
ucsc-xmlcat
|
public |
Concatenate xml files together, stuffing all records inside a single outer tag.
|
2024-12-14 |
|
bioconductor-macorrplot
|
public |
Visualize artificial correlation in microarray data
|
2024-12-14 |
|
perl-indirect
|
public |
Lexically warn about using the indirect method call syntax.
|
2024-12-14 |
|
bioconductor-treeio
|
public |
Base Classes and Functions for Phylogenetic Tree Input and Output
|
2024-12-14 |
|
ucsc-splitfile
|
public |
Split up a file
|
2024-12-14 |
|
bioconductor-agilp
|
public |
Agilent expression array processing package
|
2024-12-14 |
|
bioconductor-specl
|
public |
specL - Prepare Peptide Spectrum Matches for Use in Targeted Proteomics
|
2024-12-14 |
|
ggcat
|
public |
Compacted and colored de Bruijn graph construction and querying.
|
2024-12-14 |
|
bioconductor-rmelting
|
public |
R Interface to MELTING 5
|
2024-12-14 |
|
bioconductor-rimmport
|
public |
RImmPort: Enabling Ready-for-analysis Immunology Research Data
|
2024-12-14 |
|
bioconductor-multimed
|
public |
Testing multiple biological mediators simultaneously
|
2024-12-14 |
|
bioconductor-clustcomp
|
public |
Clustering Comparison Package
|
2024-12-14 |
|
bioconductor-stringdb
|
public |
STRINGdb - Protein-Protein Interaction Networks and Functional Enrichment Analysis
|
2024-12-14 |
