|
covtobed
|
public |
covtobed - generate a BED file of covered regions from a BAM file
|
2024-12-14 |
|
bioconductor-geneticsped
|
public |
Pedigree and genetic relationship functions
|
2024-12-14 |
|
paml
|
public |
A package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood.
|
2024-12-14 |
|
macs3
|
public |
Model Based Analysis for ChIP-Seq data.
|
2024-12-14 |
|
bioconductor-sizepower
|
public |
Sample Size and Power Calculation in Micorarray Studies
|
2024-12-14 |
|
tpmcalculator
|
public |
TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files.
|
2024-12-14 |
|
ucsc-blasttopsl
|
public |
Convert blast alignments to PSLs.
|
2024-12-14 |
|
bioconductor-empiricalbrownsmethod
|
public |
Uses Brown's method to combine p-values from dependent tests
|
2024-12-14 |
|
gem3-mapper
|
public |
The GEM read mapper (v3).
|
2024-12-14 |
|
bioconductor-podcall
|
public |
Positive Droplet Calling for DNA Methylation Droplet Digital PCR
|
2024-12-14 |
|
bioconductor-modcon
|
public |
Modifying splice site usage by changing the mRNP code, while maintaining the genetic code
|
2024-12-14 |
|
bioconductor-compspot
|
public |
compSPOT: Tool for identifying and comparing significantly mutated genomic hotspots
|
2024-12-14 |
|
bioconductor-flowgraph
|
public |
Identifying differential cell populations in flow cytometry data accounting for marker frequency
|
2024-12-14 |
|
bioconductor-granulator
|
public |
Rapid benchmarking of methods for *in silico* deconvolution of bulk RNA-seq data
|
2024-12-14 |
|
decifer
|
public |
DeCiFer simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell fractions (DCF)
|
2024-12-14 |
|
ucsc-xmlcat
|
public |
Concatenate xml files together, stuffing all records inside a single outer tag.
|
2024-12-14 |
|
bioconductor-macorrplot
|
public |
Visualize artificial correlation in microarray data
|
2024-12-14 |
|
perl-indirect
|
public |
Lexically warn about using the indirect method call syntax.
|
2024-12-14 |
|
bioconductor-treeio
|
public |
Base Classes and Functions for Phylogenetic Tree Input and Output
|
2024-12-14 |
|
ucsc-splitfile
|
public |
Split up a file
|
2024-12-14 |
|
bioconductor-agilp
|
public |
Agilent expression array processing package
|
2024-12-14 |
|
bioconductor-specl
|
public |
specL - Prepare Peptide Spectrum Matches for Use in Targeted Proteomics
|
2024-12-14 |
|
ggcat
|
public |
Compacted and colored de Bruijn graph construction and querying.
|
2024-12-14 |
|
bioconductor-rmelting
|
public |
R Interface to MELTING 5
|
2024-12-14 |
|
bioconductor-rimmport
|
public |
RImmPort: Enabling Ready-for-analysis Immunology Research Data
|
2024-12-14 |
|
bioconductor-multimed
|
public |
Testing multiple biological mediators simultaneously
|
2024-12-14 |
|
bioconductor-clustcomp
|
public |
Clustering Comparison Package
|
2024-12-14 |
|
bioconductor-stringdb
|
public |
STRINGdb - Protein-Protein Interaction Networks and Functional Enrichment Analysis
|
2024-12-14 |
|
bgreat
|
public |
BGREAT2 is a read mapping tool for NGS sequencing data that align reads on a de Bruijn graph. Preliminary version described at https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1103-9 and used in Bcool a short read corrector (https://arxiv.org/abs/1711.03336)
|
2024-12-14 |
|
bioconductor-trajectorygeometry
|
public |
This Package Discovers Directionality in Time and Pseudo-times Series of Gene Expression Patterns
|
2024-12-14 |
|
10x_bamtofastq
|
public |
Tool for converting 10x BAMs produced by Cell Ranger, Space Ranger, Cell Ranger ATAC, Cell Ranger DNA,
and Long Ranger back to FASTQ files that can be used as inputs to re-run analysis
|
2024-12-14 |
|
kmercamel
|
public |
KmerCamel🐫 - compressing k-mer sets using masked superstrings
|
2024-12-14 |
|
bioconductor-geva
|
public |
Gene Expression Variation Analysis (GEVA)
|
2024-12-14 |
|
bioconductor-pmm
|
public |
Parallel Mixed Model
|
2024-12-14 |
|
bioconductor-anvilbilling
|
public |
Provide functions to retrieve and report on usage expenses in NHGRI AnVIL (anvilproject.org).
|
2024-12-14 |
|
bioconductor-scfeaturefilter
|
public |
A correlation-based method for quality filtering of single-cell RNAseq data
|
2024-12-14 |
|
bioconductor-asafe
|
public |
Ancestry Specific Allele Frequency Estimation
|
2024-12-14 |
|
bioconductor-rcollectl
|
public |
Help use collectl with R in Linux, to measure resource consumption in R processes
|
2024-12-14 |
|
bioconductor-mbttest
|
public |
Multiple Beta t-Tests
|
2024-12-14 |
|
bioconductor-qvalue
|
public |
Q-value estimation for false discovery rate control
|
2024-12-14 |
|
bioconductor-chicago
|
public |
CHiCAGO: Capture Hi-C Analysis of Genomic Organization
|
2024-12-14 |
|
bioconductor-mapscape
|
public |
mapscape
|
2024-12-14 |
|
bioconductor-targetscore
|
public |
TargetScore: Infer microRNA targets using microRNA-overexpression data and sequence information
|
2024-12-14 |
|
bioconductor-seq.hotspot
|
public |
Targeted sequencing panel design based on mutation hotspots
|
2024-12-14 |
|
bioconductor-informeasure
|
public |
R implementation of information measures
|
2024-12-14 |
|
perl-json-parse
|
public |
Read JSON into a Perl variable
|
2024-12-14 |
|
r-proteus-bartongroup
|
public |
R package for analysing proteomics data
|
2024-12-14 |
|
perl-forks
|
public |
drop-in replacement for Perl threads using fork()
|
2024-12-14 |
|
r-spring
|
public |
Semi-Parametric Rank-based approach for INference in Graphical model (SPRING)
|
2024-12-14 |
|
cage
|
public |
Changepoint Analysis for Efficient Variant Calling
|
2024-12-14 |
