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bwread
|
public |
Read bigwig files quickly into PyRanges or DataFrames
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2024-12-15 |
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batvi
|
public |
Detect viral integrations
|
2024-12-15 |
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difcover
|
public |
Pipeline to identify genomic regions with read coverage differences between pairs of samples
|
2024-12-15 |
|
r-bedtoolsr
|
public |
R package wrapping bedtools
|
2024-12-15 |
|
bioconductor-ndexr
|
public |
NDEx R client library
|
2024-12-15 |
|
r-umi4c
|
public |
Process UMI-4C data from scratch to produce nice plots.
|
2024-12-15 |
|
bioconductor-dupradar
|
public |
Assessment of duplication rates in RNA-Seq datasets
|
2024-12-15 |
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snikt
|
public |
Identify and remove adapter/systemic contamination in metagenomic sequencing DNA/RNA data.
|
2024-12-15 |
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genome_updater
|
public |
genome_updater: bash script to download/update snapshots of refseq/genbank
|
2024-12-15 |
|
rascaf
|
public |
No Summary
|
2024-12-15 |
|
demuxlet
|
public |
Genetic multiplexing of barcoded single cell RNA-seq
|
2024-12-15 |
|
fastq_utils
|
public |
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
|
2024-12-15 |
|
soapdenovo-trans
|
public |
No Summary
|
2024-12-15 |
|
minys
|
public |
MinYS allows targeted assembly of bacterial genomes using a reference-guided pipeline.
|
2024-12-15 |
|
pbipa
|
public |
Improved Phased Assembly
|
2024-12-15 |
|
psiclass
|
public |
Simultaneous multi-sample transcript assembler for RNA-seq data
|
2024-12-15 |
|
galaxy-ml
|
public |
APIs for Galaxy machine learning tools
|
2024-12-15 |
|
perl-set-intervaltree
|
public |
An interval tree implementation in PERL.
|
2024-12-15 |
|
perl-template-toolkit
|
public |
comprehensive template processing system
|
2024-12-15 |
|
bioconductor-tanggle
|
public |
Visualization of Phylogenetic Networks
|
2024-12-15 |
|
bioconductor-ggtreedendro
|
public |
Drawing 'dendrogram' using 'ggtree'
|
2024-12-15 |
|
coinfinder
|
public |
A tool for the identification of coincident (associating and dissociating) genes in pangenomes.
|
2024-12-15 |
|
bioconductor-ggtreeextra
|
public |
An R Package To Add Geometric Layers On Circular Or Other Layout Tree Of "ggtree"
|
2024-12-15 |
|
bioconductor-philr
|
public |
Phylogenetic partitioning based ILR transform for metagenomics data
|
2024-12-15 |
|
r-fastbaps
|
public |
A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data
|
2024-12-15 |
|
bioconductor-sitepath
|
public |
Phylogeny-based sequence clustering with site polymorphism
|
2024-12-15 |
|
bioconductor-clstutils
|
public |
Tools for performing taxonomic assignment
|
2024-12-15 |
|
rnabridge-align
|
public |
A tool to construct the alignments of entire fragments given the alignments of paired-end reads.
|
2024-12-15 |
|
bcftools
|
public |
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed. Most commands accept VCF, bgzipped VCF and BCF with filetype detected automatically even when streaming from a pipe. Indexed VCF and BCF will work in all situations. Un-indexed VCF and BCF and streams will work in most, but not all situations.
|
2024-12-15 |
|
expansionhunterdenovo
|
public |
ExpansionHunter Denovo (EHdn) is a suite of tools for detecting novel expansions of short tandem repeats (STRs).
|
2024-12-15 |
|
lumpy-sv-minimal
|
public |
A general probabilistic framework for structural variant discovery. This package contains only the lumpy executable
|
2024-12-15 |
|
segemehl
|
public |
Short read mapping with gaps
|
2024-12-15 |
|
micall-lite
|
public |
A bioinformatic pipeline for mapping of FASTQ data to a set of reference
sequences to generate consensus sequences, variant calls and coverage maps.
|
2024-12-15 |
|
breseq
|
public |
A computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data.
|
2024-12-15 |
|
pyfamsa
|
public |
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
|
2024-12-15 |
|
coverm
|
public |
CoverM aims to be a configurable, easy to use and fast DNA read coverage and relative abundance calculator focused on metagenomics applications
|
2024-12-15 |
|
novobreak
|
public |
local assembly for breakpoint detection in cancer genomes
|
2024-12-15 |
|
nanopolish
|
public |
Signal-level algorithms for MinION data.
|
2024-12-15 |
|
gap2seq
|
public |
Gap2Seq is a tool for filling gaps between contigs in genome assemblies.
|
2024-12-15 |
|
intarna
|
public |
Efficient RNA-RNA interaction prediction incorporating seeding and accessibility of interacting sites
|
2024-12-15 |
|
bpp-seq
|
public |
Bio++ is a set of C++ libraries for Bioinformatics.
|
2024-12-15 |
|
bioconductor-deeppincs
|
public |
Protein Interactions and Networks with Compounds based on Sequences using Deep Learning
|
2024-12-15 |
|
metabat2
|
public |
Metagenome binning
|
2024-12-15 |
|
r-syntactic
|
public |
Make syntactically valid names out of character vectors.
|
2024-12-15 |
|
longreadsum
|
public |
Long read sequencing data quality control tool
|
2024-12-15 |
|
r-acidmarkdown
|
public |
Toolkit for extending the functionality of R Markdown.
|
2024-12-15 |
|
rpbp
|
public |
Ribosome profiling with Bayesian predictions (Rp-Bp)
|
2024-12-15 |
|
deepchopper
|
public |
A Genomic Language Model for Chimera Artifact Detection in Nanopore Direct RNA Sequencing.
|
2024-12-15 |
|
bioconductor-rebet
|
public |
The subREgion-based BurdEn Test (REBET)
|
2024-12-15 |
|
parallel-meta-suite
|
public |
Parallel-META-Suite is an interactive software package for rapid and comprehensive microbiome analysis.
|
2024-12-15 |
