| Package Name | Access | Summary | Updated |
|---|---|---|---|
| kb-python | public | A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing. | 2025-05-28 |
| pling | public | Pling computes the rearrangement distance between plasmids and clusters on their basis | 2025-05-28 |
| gbintk | public | GraphBin-Tk: assembly graph-based metagenomic binning toolkit | 2025-05-28 |
| kat | public | KAT is a suite of tools that analyse jellyfish hashes or sequence files (fasta or fastq) using kmer counts | 2025-05-27 |
| scripps-msms | public | Fast algorithm for computing molecular surfaces | 2025-05-27 |
| metacompass | public | MetaCompass: Reference-guided Assembly of Metagenomes. | 2025-05-27 |
| igv-notebook | public | Package for embedding the igv.js genome visualization in IPython notebooks. | 2025-05-27 |
| ltr_harvest_parallel | public | Perl wrapper for parallel execution of LTR_harvest | 2025-05-27 |
| hictkpy | public | Python bindings for hictk: read and write .cool and .hic files directly from Python | 2025-05-27 |
| metacache | public | MetaCache is a classification system for mapping genomic sequences (short reads, long reads, contigs, ...) from metagenomic samples to their most likely taxon of origin. | 2025-05-26 |
| r-eggnog | public | EggNOG database annotations. | 2025-05-26 |
| r-panther | public | PANTHER database annotations. | 2025-05-26 |
| dagchainer | public | DAGchainer identifies syntenic regions. | 2025-05-25 |
| deepvariant | public | DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. | 2025-05-24 |
| ratt | public | Rapid Annotation Transfer Tool | 2025-05-24 |
| perl-devel-size | public | Perl extension for finding the memory usage of Perl variables | 2025-05-24 |
| shortstack | public | ShortStack: Comprehensive annotation and quantification of small RNA genes | 2025-05-24 |
| bio2zarr | public | Convert bioinformatics data to Zarr | 2025-05-24 |
| metator | public | Metagenomic binning based on Hi-C data. | 2025-05-23 |
| pegasusio | public | PegasusIO is the IO package for Pegasus. | 2025-05-22 |
| ms2query | public | Reliable and fast MS/MS spectral based analogue search. | 2025-05-22 |
| pyseer | public | Sequence Element Enrichment Analysis (SEER), python implementation. | 2025-05-22 |
| palantir | public | Palantir for modeling continuous cell state and cell fate choices in single cell data | 2025-05-22 |
| ucsc-cell-browser | public | A browser for single-cell data, main site at http://cells.ucsc.edu. UCSC Cellbrowser, an interactive browser for single cell data. Includes importers and basic pipelines for text files, Seurat, Scanpy and Cellranger. All Javascript - does not require a server backend. | 2025-05-22 |
| biobb_structure_checking | public | BioBB_structure_checking performs MDWeb structure checking set as a command line utility. | 2025-05-22 |
