| Package Name | Access | Summary | Updated |
|---|---|---|---|
| phyloaln | public | PhyloAln: a reference-based multiple sequence alignment tool for phylogeny | 2025-06-08 |
| annosine2 | public | AnnoSINE_v2 - SINE Annotation Tool for Plant and Animal Genomes. | 2025-06-08 |
| uniqsketch | public | UniqSketch: sensitive and resource-efficient strain-level detection in metagenomes. | 2025-06-08 |
| paragone | public | Identify ortholog groups from a set of paralog sequences from multiple taxa. | 2025-06-07 |
| r-monocle3 | public | An analysis toolkit for single-cell RNA-seq. | 2025-06-07 |
| treeshrink | public | an algorithm for detecting (and removing) abnormally long branches in one or more phylogenetic trees | 2025-06-07 |
| mothur | public | This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community. | 2025-06-06 |
| viral_consensus | public | Fast viral consensus genome reconstruction. | 2025-06-06 |
| marbel | public | Marbel generates realistic in silico metatranscriptomic dataset based on specified parameters. | 2025-06-06 |
| bcalm | public | BCALM 2 is a bioinformatics tool for constructing the compacted de Bruijn graph from sequencing data. | 2025-06-06 |
| gfatools | public | Tools for manipulating sequence graphs in the GFA and rGFA formats. | 2025-06-06 |
| flexidot | public | Flexible dotplotting of genomic sequences. | 2025-06-06 |
| bcftools-gtc2vcf-plugin | public | Tools to convert Illumina and Affymetrix array intensity data files into VCF files. | 2025-06-06 |
| hmftools-bwa-plus | public | bwa-mem with extensions for WiGiTS | 2025-06-06 |
| amalgkit | public | Tools for transcriptome amalgamation | 2025-06-06 |
| phylogenize | public | Phylogenize is a tool that allows users to link microbial genes to environments, accounting for phylogeny. | 2025-06-06 |
| uchime | public | UCHIME2 is an algorithm for detecting chimeric sequences. | 2025-06-06 |
| moabs | public | Methylation analysis on Bisulfite-Sequencing reads | 2025-06-05 |
| phynteny_transformer | public | Phynteny: Synteny-based prediction of bacteriophage genes. | 2025-06-05 |
| perl-file-find-rule | public | Alternative interface to File::Find. | 2025-06-05 |
| hicberg | public | Statistical profiling based tool for contact data (Hi-C, ChIA-PET, Capture-C, etc.) and genomics data reconstruction | 2025-06-05 |
| pacini_typing | public | YAML-based bacterial genotyping application | 2025-06-05 |
| virulencefinder | public | VirulenceFinder identifies virulence genes in total or partial sequenced isolates of bacteria | 2025-06-05 |
| pasta | public | An implementation of the PASTA (Practical Alignment using Sate and TrAnsitivity) algorithm. | 2025-06-05 |
| giatools | public | Tools required for Galaxy Image Analysis | 2025-06-05 |
