| Package Name | Access | Summary | Updated |
|---|---|---|---|
| bcftools | public | BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed. Most commands accept VCF, bgzipped VCF and BCF with filetype detected automatically even when streaming from a pipe. Indexed VCF and BCF will work in all situations. Un-indexed VCF and BCF and streams will work in most, but not all situations. | 2025-06-15 |
| fusion-report | public | Tool for parsing outputs from fusion detection tools. Part of the nf-core/rnafusion pipeline. | 2025-06-15 |
| splitcode | public | Flexible parsing, interpretation, and editing of technical sequences. | 2025-06-15 |
| asciigenome | public | Command-line genome browser running from terminal window and solely based on ASCII characters | 2025-06-15 |
| fa-lint | public | A Fasta linter/validator | 2025-06-15 |
| pymlst | public | python Mlst Local Search Tool | 2025-06-15 |
| instanovo | public | InstaNovo enables diffusion-powered de novo peptide sequencing in large scale proteomics experiments. | 2025-06-15 |
| perl-indirect | public | Lexically warn about using the indirect method call syntax. | 2025-06-13 |
| perl-http-message | public | HTTP style message (base class). | 2025-06-13 |
| minipolish | public | A tool for Racon polishing miniasm assemblies. | 2025-06-13 |
| perl-graphviz | public | Interface to AT&T's GraphViz. Deprecated. See GraphViz2. | 2025-06-13 |
| mirmachine | public | A command line to tool detect miRNA homologs in genome sequences. | 2025-06-13 |
| perl-parallel-iterator | public | Simple parallel execution. | 2025-06-13 |
| perl-file-sharedir-install | public | Install shared files. | 2025-06-13 |
| perl-namespace-autoclean | public | Keep imports out of your namespace | 2025-06-12 |
| perl-archive-tar | public | Manipulates TAR archives. | 2025-06-12 |
| perl-devel-checklib | public | check that a library is available | 2025-06-12 |
| perl-html-form | public | Class that represents an HTML form element. | 2025-06-12 |
| r-ic10 | public | Implementation of the classifier described in the paper 'Genome-driven integrated classification of breast cancer validated in over 7,500 samples' (Ali HR et al., Genome Biology 2014). It uses copy number and/or expression form breast cancer data, trains a pamr classifier (Tibshirani et al.) with the features available and predicts the iC10 group. | 2025-06-12 |
| rearr | public | Chimeric alignment of CRISPR-seq | 2025-06-12 |
| perl-bio-automatedannotation | public | Automated annotation of assemblies. | 2025-06-12 |
| perl-gdgraph | public | Produces charts with GD. | 2025-06-12 |
| perl-extutils-manifest | public | Utilities to write and check a MANIFEST file. | 2025-06-12 |
| actc | public | PacBio utility to align clr to ccs reads | 2025-06-12 |
| mbg | public | Minimizer based sparse de Bruijn graph constructor | 2025-06-12 |
