|
bioconductor-protgenerics
|
public |
Generic infrastructure for Bioconductor mass spectrometry packages
|
2024-12-18 |
|
rnashapes
|
public |
RNAshape abstraction maps structures to a tree-like domain of shapes, retaining adjacency and nesting of structural features, but disregarding helix lengths. Shape abstraction integrates well with dynamic programming algorithms, and hence it can be applied during structure prediction rather than afterwards. This avoids exponential explosion and can still give us a non-heuristic and complete account of properties of the molecule's folding space.
|
2024-12-18 |
|
acms
|
public |
Ambivalent Covariance Models (aCMs) are our prototypic suggestion to extend CMs with more than one consensus structure.
|
2024-12-18 |
|
pkiss
|
public |
RNA secondary structure prediction including K-type and kissing hairpin- pseudoknots.
|
2024-12-18 |
|
knotinframe
|
public |
Predicts -1 frameshift sites with simple pseudoknots
|
2024-12-18 |
|
bioconductor-seqtools
|
public |
Analysis of nucleotide, sequence and quality content on fastq files
|
2024-12-18 |
|
minimap2
|
public |
A versatile pairwise aligner for genomic and spliced nucleotide sequences.
|
2024-12-18 |
|
bioconductor-snpstats
|
public |
SnpMatrix and XSnpMatrix classes and methods
|
2024-12-18 |
|
opticlust
|
public |
Single cell clustering and recommendations at a glance.
|
2024-12-18 |
|
lexicmap
|
public |
efficient sequence alignment against millions of prokaryotic genomes
|
2024-12-18 |
|
svseq2
|
public |
An improved approach for accurate and efficient calling of structural variations with low-coverage sequence data
|
2024-12-18 |
|
melon
|
public |
Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
|
2024-12-18 |
|
seqsizzle
|
public |
A pager for viewing FASTQ files with fuzzy adaptor matching and coloring.
|
2024-12-18 |
|
cortexpy
|
public |
A Python API for manipulating (Mc)Cortex de novo assembly graph and link data
|
2024-12-18 |
|
bioconductor-fmcsr
|
public |
Mismatch Tolerant Maximum Common Substructure Searching
|
2024-12-18 |
|
bioconductor-affy
|
public |
Methods for Affymetrix Oligonucleotide Arrays
|
2024-12-18 |
|
r-restfulr
|
public |
Models a RESTful service as if it were a nested R list.
|
2024-12-18 |
|
necat
|
public |
Nanopore data assembler
|
2024-12-18 |
|
medicc2
|
public |
Whole-genome doubling-aware copy number phylogenies for cancer evolution
|
2024-12-18 |
|
bioconductor-mscoreutils
|
public |
Core Utils for Mass Spectrometry Data
|
2024-12-18 |
|
bioconductor-multtest
|
public |
Resampling-based multiple hypothesis testing
|
2024-12-18 |
|
bioconductor-hem
|
public |
Heterogeneous error model for identification of differentially expressed genes under multiple conditions
|
2024-12-18 |
|
bioconductor-mulcom
|
public |
Calculates Mulcom test
|
2024-12-18 |
|
bioconductor-eir
|
public |
Accelerated similarity searching of small molecules
|
2024-12-18 |
|
bioconductor-cancerclass
|
public |
Development and validation of diagnostic tests from high-dimensional molecular data
|
2024-12-18 |
|
bioconductor-discordant
|
public |
The Discordant Method: A Novel Approach for Differential Correlation
|
2024-12-18 |
|
bioconductor-nanostringdiff
|
public |
Differential Expression Analysis of NanoString nCounter Data
|
2024-12-18 |
|
bioconductor-flowcatchr
|
public |
Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cells
|
2024-12-18 |
|
bioconductor-yeastexpdata
|
public |
Yeast Experimental Data
|
2024-12-18 |
|
bioconductor-metabcombiner
|
public |
Method for Combining LC-MS Metabolomics Feature Measurements
|
2024-12-18 |
|
bioconductor-phenstat
|
public |
Statistical analysis of phenotypic data
|
2024-12-18 |
|
bioconductor-biocio
|
public |
Standard Input and Output for Bioconductor Packages
|
2024-12-18 |
|
bioconductor-seqc
|
public |
RNA-seq data generated from SEQC (MAQC-III) study
|
2024-12-18 |
|
bioconductor-prodata
|
public |
SELDI-TOF data of Breast cancer samples
|
2024-12-18 |
|
bioconductor-hopach
|
public |
Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH)
|
2024-12-18 |
|
bioconductor-snagee
|
public |
Signal-to-Noise applied to Gene Expression Experiments
|
2024-12-18 |
|
bioconductor-rcellminerdata
|
public |
rcellminerData: Molecular Profiles and Drug Response for the NCI-60 Cell Lines
|
2024-12-18 |
|
bioconductor-colonca
|
public |
exprSet for Alon et al. (1999) colon cancer data
|
2024-12-18 |
|
r-codedepends
|
public |
Tools for analyzing R expressions or blocks of code and determining the dependencies between them. It focuses on R scripts, but can be used on the bodies of functions. There are many facilities including the ability to summarize or get a high-level view of code, determining dependencies between variables, code improvement suggestions.
|
2024-12-18 |
|
bioconductor-mfa
|
public |
Bayesian hierarchical mixture of factor analyzers for modelling genomic bifurcations
|
2024-12-18 |
|
bioconductor-curatedovariandata
|
public |
Clinically Annotated Data for the Ovarian Cancer Transcriptome
|
2024-12-18 |
|
bioconductor-bioassayr
|
public |
Cross-target analysis of small molecule bioactivity
|
2024-12-18 |
|
bioconductor-dlbcl
|
public |
Diffuse large B-cell lymphoma expression data
|
2024-12-18 |
|
bioconductor-qcmetrics
|
public |
A Framework for Quality Control
|
2024-12-18 |
|
bioconductor-lmdme
|
public |
Linear Model decomposition for Designed Multivariate Experiments
|
2024-12-18 |
|
bioconductor-multiscan
|
public |
R package for combining multiple scans
|
2024-12-18 |
|
bioconductor-golubesets
|
public |
exprSets for golub leukemia data
|
2024-12-18 |
|
bioconductor-hmdbquery
|
public |
utilities for exploration of human metabolome database
|
2024-12-18 |
|
bioconductor-crcl18
|
public |
CRC cell line dataset
|
2024-12-18 |
|
bioconductor-prostatecancerstockholm
|
public |
Prostate Cancer Data
|
2024-12-18 |
