|
r-mspbwt
|
public |
Multi Symbol Positional Burrows Wheeler Transform
|
2024-12-18 |
|
r-diffcorr
|
public |
A method for identifying pattern changes between 2 experimental conditions in correlation networks (e.g., gene co-expression networks), which builds on a commonly used association measure, such as Pearson's correlation coefficient. This package includes functions to calculate correlation matrices for high-dimensional dataset and to test differential correlation, which means the changes in the correlation relationship among variables (e.g., genes and metabolites) between 2 experimental conditions.
|
2024-12-18 |
|
bioconductor-cll
|
public |
A Package for CLL Gene Expression Data
|
2024-12-18 |
|
bioconductor-rcwl
|
public |
An R interface to the Common Workflow Language
|
2024-12-18 |
|
bioconductor-metabomxtr
|
public |
A package to run mixture models for truncated metabolomics data with normal or lognormal distributions
|
2024-12-18 |
|
r-tidygenomics
|
public |
Handle genomic data within data frames just as you would with 'GRanges'. This packages provides method to deal with genomic intervals the "tidy-way" which makes it simpler to integrate in the the general data munging process. The API is inspired by the popular 'bedtools' and the genome_join() method from the 'fuzzyjoin' package.
|
2024-12-18 |
|
insurveyor
|
public |
An insertion caller for Illumina paired-end WGS data.
|
2024-12-18 |
|
r-velocyto.r
|
public |
RNA velocity estimation in R
|
2024-12-18 |
|
bioconductor-dirichletmultinomial
|
public |
Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data
|
2024-12-18 |
|
bioconductor-rebook
|
public |
Re-using Content in Bioconductor Books
|
2024-12-18 |
|
bioconductor-metaseq
|
public |
Meta-analysis of RNA-Seq count data in multiple studies
|
2024-12-18 |
|
r-crmn
|
public |
Implements the Cross-contribution Compensating Multiple standard Normalization (CCMN) method described in Redestig et al. (2009) Analytical Chemistry <doi:10.1021/ac901143w> and other normalization algorithms.
|
2024-12-18 |
|
bioconductor-flowspecs
|
public |
Tools for processing of high-dimensional cytometry data
|
2024-12-18 |
|
ntstat
|
public |
a toolkit for statistical analysis of k-mer frequency and depth
|
2024-12-18 |
|
bioconductor-ampaffyexample
|
public |
Example of Amplified Data
|
2024-12-18 |
|
bioconductor-turbonorm
|
public |
A fast scatterplot smoother suitable for microarray normalization
|
2024-12-18 |
|
bioconductor-ruvnormalize
|
public |
RUV for normalization of expression array data
|
2024-12-18 |
|
bioconductor-ruvcorr
|
public |
Removal of unwanted variation for gene-gene correlations and related analysis
|
2024-12-18 |
|
bioconductor-tmixclust
|
public |
Time Series Clustering of Gene Expression with Gaussian Mixed-Effects Models and Smoothing Splines
|
2024-12-18 |
|
bioconductor-tidyflowcore
|
public |
tidyFlowCore: Bringing flowCore to the tidyverse
|
2024-12-18 |
|
bioconductor-gwasdata
|
public |
Data used in the examples and vignettes of the GWASTools package
|
2024-12-18 |
|
nthits
|
public |
ntHits is a tool for efficiently counting and filtering k-mers based on their frequencies
|
2024-12-18 |
|
r-acidplyr
|
public |
A grammar of S4 class data manipulation.
|
2024-12-18 |
|
bioconductor-complexheatmap
|
public |
Make Complex Heatmaps
|
2024-12-18 |
|
bioconductor-derfinderhelper
|
public |
derfinder helper package
|
2024-12-18 |
|
r-perfmeas
|
public |
Package that implements different performance measures for classification and ranking tasks. AUC, precision at a given recall, F-score for single and multiple classes are available.
|
2024-12-18 |
|
bioconductor-nethet
|
public |
A bioconductor package for high-dimensional exploration of biological network heterogeneity
|
2024-12-18 |
|
bioconductor-flowchic
|
public |
Analyze flow cytometric data using histogram information
|
2024-12-18 |
|
r-imputelcmd
|
public |
The package contains a collection of functions for left-censored missing data imputation. Left-censoring is a special case of missing not at random (MNAR) mechanism that generates non-responses in proteomics experiments. The package also contains functions to artificially generate peptide/protein expression data (log-transformed) as random draws from a multivariate Gaussian distribution as well as a function to generate missing data (both randomly and non-randomly). For comparison reasons, the package also contains several wrapper functions for the imputation of non-responses that are missing at random. * New functionality has been added: a hybrid method that allows the imputation of missing values in a more complex scenario where the missing data are both MAR and MNAR.
|
2024-12-18 |
|
bioconductor-nucleosim
|
public |
Generate synthetic nucleosome maps
|
2024-12-18 |
|
prophyle
|
public |
ProPhyle is an accurate, resource-frugal and deterministic phylogeny-based metagenomic classifier.
|
2024-12-18 |
|
bioconductor-scde
|
public |
Single Cell Differential Expression
|
2024-12-18 |
|
bioconductor-ebcoexpress
|
public |
EBcoexpress for Differential Co-Expression Analysis
|
2024-12-18 |
|
r-aroma.affymetrix
|
public |
A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system. The only parameter that limits the number of chips that can be processed is the amount of available disk space. The Aroma Framework has successfully been used in studies to process tens of thousands of arrays. This package has actively been used since 2006.
|
2024-12-18 |
|
bioconductor-healthyflowdata
|
public |
Healthy dataset used by the flowMatch package
|
2024-12-18 |
|
bioconductor-genetclassifier
|
public |
Classify diseases and build associated gene networks using gene expression profiles
|
2024-12-18 |
|
bioconductor-mogamun
|
public |
MOGAMUN: A Multi-Objective Genetic Algorithm to Find Active Modules in Multiplex Biological Networks
|
2024-12-18 |
|
bioconductor-orderedlist
|
public |
Similarities of Ordered Gene Lists
|
2024-12-18 |
|
bioconductor-bumpymatrix
|
public |
Bumpy Matrix of Non-Scalar Objects
|
2024-12-18 |
|
bioconductor-pvac
|
public |
PCA-based gene filtering for Affymetrix arrays
|
2024-12-18 |
|
pb-falcon
|
public |
FALCON/Unzip tool-suite (originally by Jason Chin)
|
2024-12-18 |
|
bioconductor-siggenes
|
public |
Multiple Testing using SAM and Efron's Empirical Bayes Approaches
|
2024-12-18 |
|
r-ontologyplot
|
public |
Functions for visualising sets of ontological terms using the 'graphviz' layout system.
|
2024-12-18 |
|
bioconductor-qpcrnorm
|
public |
Data-driven normalization strategies for high-throughput qPCR data.
|
2024-12-18 |
|
bioconductor-kegggraph
|
public |
KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor
|
2024-12-18 |
|
bioconductor-geosubmission
|
public |
Prepares microarray data for submission to GEO
|
2024-12-18 |
|
bioconductor-diggit
|
public |
Inference of Genetic Variants Driving Cellular Phenotypes
|
2024-12-18 |
|
bioconductor-gaga
|
public |
GaGa hierarchical model for high-throughput data analysis
|
2024-12-18 |
|
umis
|
public |
Tools for processing UMI RNA-tag data
|
2024-12-18 |
|
bioconductor-bronchialil13
|
public |
time course experiment involving il13
|
2024-12-18 |
