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r-statvisual
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public |
Visualization functions in the applications of translational medicine (TM) and biomarker (BM) development to compare groups by statistically visualizing data and/or results of analyses, such as visualizing data by displaying in one figure different groups' histograms, boxplots, densities, scatter plots, error-bar plots, or trajectory plots, by displaying scatter plots of top principal components or dendrograms with data points colored based on group information, or visualizing volcano plots to check the results of whole genome analyses for gene differential expression.
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2024-12-19 |
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bioconductor-dnashaper
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public |
High-throughput prediction of DNA shape features
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2024-12-19 |
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bioconductor-crisprbase
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public |
Base functions and classes for CRISPR gRNA design
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2024-12-19 |
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bioconductor-lola
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public |
Locus overlap analysis for enrichment of genomic ranges
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2024-12-19 |
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bioconductor-excluderanges
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public |
Genomic coordinates of problematic genomic regions
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2024-12-19 |
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bioconductor-bcrank
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public |
Predicting binding site consensus from ranked DNA sequences
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2024-12-19 |
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bioconductor-heatmaps
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public |
Flexible Heatmaps for Functional Genomics and Sequence Features
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2024-12-19 |
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bioconductor-decipher
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public |
Tools for curating, analyzing, and manipulating biological sequences
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2024-12-19 |
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bioconductor-cogeqc
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public |
Systematic quality checks on comparative genomics analyses
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2024-12-19 |
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bioconductor-cnvmetrics
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public |
Copy Number Variant Metrics
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2024-12-19 |
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bioconductor-biomartgogenesets
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public |
Gene Ontology Gene Sets from BioMart
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2024-12-19 |
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bioconductor-elmer.data
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public |
Data for the ELMER package
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2024-12-19 |
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bioconductor-gatefinder
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public |
Projection-based Gating Strategy Optimization for Flow and Mass Cytometry
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2024-12-19 |
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bioconductor-annotationfilter
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public |
Facilities for Filtering Bioconductor Annotation Resources
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2024-12-19 |
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bioconductor-cyanofilter
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public |
Phytoplankton Population Identification using Cell Pigmentation and/or Complexity
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2024-12-19 |
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bioconductor-pwmenrich
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public |
PWM enrichment analysis
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2024-12-19 |
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blockclust
|
public |
Efficient clustering and classification of non-coding RNAs from short read RNA-seq profiles.
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2024-12-19 |
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bioconductor-msa
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public |
Multiple Sequence Alignment
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2024-12-19 |
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bioconductor-rnbeads.hg19
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public |
RnBeads.hg19
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2024-12-19 |
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bioconductor-rsweep
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public |
Spaced Words Projection (SWeeP)
|
2024-12-19 |
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bioconductor-keggrest
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public |
Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)
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2024-12-19 |
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bioconductor-systempiperdata
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public |
systemPipeRdata: Workflow templates and sample data
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2024-12-19 |
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bioconductor-gtrellis
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public |
Genome Level Trellis Layout
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2024-12-19 |
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bioconductor-iwtomics
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public |
Interval-Wise Testing for Omics Data
|
2024-12-19 |
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bioconductor-champdata
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public |
Data Packages for ChAMP package
|
2024-12-19 |
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perl-datetime
|
public |
A date and time object for Perl
|
2024-12-19 |
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bioconductor-gcrma
|
public |
Background Adjustment Using Sequence Information
|
2024-12-19 |
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bioconductor-genomeintervals
|
public |
Operations on genomic intervals
|
2024-12-19 |
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bioconductor-genomicdatacommons
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public |
NIH / NCI Genomic Data Commons Access
|
2024-12-19 |
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bioconductor-gdrstyle
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public |
A package with style requirements for the gDR suite
|
2024-12-19 |
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bioconductor-nanostringnctools
|
public |
NanoString nCounter Tools
|
2024-12-19 |
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bioconductor-loci2path
|
public |
Loci2path: regulatory annotation of genomic intervals based on tissue-specific expression QTLs
|
2024-12-19 |
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bioconductor-tfarm
|
public |
Transcription Factors Association Rules Miner
|
2024-12-19 |
|
bioconductor-target
|
public |
Predict Combined Function of Transcription Factors
|
2024-12-19 |
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bioconductor-brain
|
public |
Baffling Recursive Algorithm for Isotope distributioN calculations
|
2024-12-19 |
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fraggenescan
|
public |
FragGeneScan is an application for finding (fragmented) genes in short reads.
|
2024-12-19 |
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cooltools
|
public |
Analysis tools for genomic interaction data stored in .cool format
|
2024-12-19 |
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pairtools
|
public |
CLI tools to process mapped Hi-C data.
|
2024-12-19 |
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r-quilt
|
public |
Rapid and accurate genotype imputation from low coverage short read, long read, and cell free DNA sequence.
|
2024-12-19 |
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mgkit
|
public |
Metagenomics Framework
|
2024-12-19 |
|
tinker
|
public |
The Tinker molecular modeling software is a complete and general package for molecular mechanics and dynamics, with some special features for biopolymers
|
2024-12-19 |
|
amplicontyper
|
public |
Tool for training model and classifying reads from environmental ONT amplicon sequencing.
|
2024-12-19 |
|
mirscore
|
public |
miRScore: A rapid and precise microRNA validation tool
|
2024-12-19 |
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bioconductor-clustall
|
public |
ClustAll: Data driven strategy to robustly identify stratification of patients within complex diseases
|
2024-12-19 |
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bioconductor-bioccheck
|
public |
Bioconductor-specific package checks
|
2024-12-19 |
|
hostile
|
public |
Hostile: accurate host decontamination
|
2024-12-19 |
|
svtk
|
public |
Utilities for consolidating, filtering, resolving, and annotating structural variants.
|
2024-12-19 |
|
bioconductor-crimage
|
public |
CRImage a package to classify cells and calculate tumour cellularity
|
2024-12-19 |
|
r-deconcell
|
public |
DeconCell is an statitsical framework for generating cell proportions predictive models using bulk expresion data. It currently has pre-calculated models
|
2024-12-19 |
|
bioconductor-spectra
|
public |
Spectra Infrastructure for Mass Spectrometry Data
|
2024-12-19 |
