| Package Name | Access | Summary | Updated |
|---|---|---|---|
| ucsc-hgloadsqltab | public | Load table into database from SQL and text files. | 2025-06-28 |
| ucsc-hgloadwiggle | public | Load a wiggle track definition into database. | 2025-06-28 |
| ucsc-bedgraphpack | public | Pack together adjacent records representing same value. | 2025-06-28 |
| ucsc-bedextendranges | public | Extend length of entries in bed 6+ data to be at least the given length, taking strand directionality into account. | 2025-06-28 |
| ucsc-chainswap | public | Swap target and query in chain. | 2025-06-28 |
| pytaxonkit | public | Python bindings for the TaxonKit library. | 2025-06-27 |
| resistify | public | A resistance gene annotation tool. | 2025-06-27 |
| dwgsim | public | Whole Genome Simulator for Next-Generation Sequencing | 2025-06-27 |
| starcode | public | Starcode: sequence clustering based on all-pairs search | 2025-06-27 |
| bioconductor-missmethyl | public | Analysing Illumina HumanMethylation BeadChip Data | 2025-06-27 |
| ucsc-twobitdup | public | check to see if a twobit file has any identical sequences in it | 2025-06-27 |
| axe-demultiplexer | public | Rapid competitive read demulitplexer. Made with tries. | 2025-06-27 |
| ucsc-xmltosql | public | Convert XML dump into a fairly normalized relational database. | 2025-06-27 |
| ucsc-twobitmask | public | Apply masking to a .2bit file, creating a new .2bit file. | 2025-06-27 |
| ucsc-wigcorrelate | public | Produce a table that correlates all pairs of wigs. | 2025-06-27 |
| ucsc-validatemanifest | public | Validates the ENCODE3 manifest.txt file. | 2025-06-27 |
| ucsc-toupper | public | Convert lower case to upper case in file. Leave other chars alone. | 2025-06-27 |
| ucsc-validatefiles | public | Validates the format of different genomic files. | 2025-06-27 |
| ucsc-trfbig | public | Mask tandem repeats on a big sequence file. | 2025-06-27 |
| ucsc-transmappsltogenepred | public | Convert PSL alignments of mRNAs to gene annotations. | 2025-06-27 |
| ucsc-wordline | public | Chop up words by white space and output them with one. | 2025-06-27 |
| emvc-2 | public | An efficient SNV variant caller based on the expectation maximization algorithm. | 2025-06-27 |
| fgap | public | FGAP: an automated gap closing tool | 2025-06-27 |
| bioconductor-illuminahumanmethylationepicv2manifest | public | Manifest for Illumina's EPIC v2.0 methylation arrays | 2025-06-27 |
| bioconductor-data-packages | public | A package to enable downloading and installation of Bioconductor data packages | 2025-06-27 |
