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bioconductor-msa
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public |
Multiple Sequence Alignment
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2024-12-19 |
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bioconductor-rnbeads.hg19
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public |
RnBeads.hg19
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2024-12-19 |
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bioconductor-rsweep
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public |
Spaced Words Projection (SWeeP)
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2024-12-19 |
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bioconductor-keggrest
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public |
Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)
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2024-12-19 |
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bioconductor-systempiperdata
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public |
systemPipeRdata: Workflow templates and sample data
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2024-12-19 |
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bioconductor-gtrellis
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public |
Genome Level Trellis Layout
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2024-12-19 |
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bioconductor-iwtomics
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public |
Interval-Wise Testing for Omics Data
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2024-12-19 |
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bioconductor-champdata
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public |
Data Packages for ChAMP package
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2024-12-19 |
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perl-datetime
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public |
A date and time object for Perl
|
2024-12-19 |
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bioconductor-gcrma
|
public |
Background Adjustment Using Sequence Information
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2024-12-19 |
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bioconductor-genomeintervals
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public |
Operations on genomic intervals
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2024-12-19 |
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bioconductor-genomicdatacommons
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public |
NIH / NCI Genomic Data Commons Access
|
2024-12-19 |
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bioconductor-gdrstyle
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public |
A package with style requirements for the gDR suite
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2024-12-19 |
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bioconductor-nanostringnctools
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public |
NanoString nCounter Tools
|
2024-12-19 |
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bioconductor-loci2path
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public |
Loci2path: regulatory annotation of genomic intervals based on tissue-specific expression QTLs
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2024-12-19 |
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bioconductor-tfarm
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public |
Transcription Factors Association Rules Miner
|
2024-12-19 |
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bioconductor-target
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public |
Predict Combined Function of Transcription Factors
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2024-12-19 |
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bioconductor-brain
|
public |
Baffling Recursive Algorithm for Isotope distributioN calculations
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2024-12-19 |
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fraggenescan
|
public |
FragGeneScan is an application for finding (fragmented) genes in short reads.
|
2024-12-19 |
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cooltools
|
public |
Analysis tools for genomic interaction data stored in .cool format
|
2024-12-19 |
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pairtools
|
public |
CLI tools to process mapped Hi-C data.
|
2024-12-19 |
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r-quilt
|
public |
Rapid and accurate genotype imputation from low coverage short read, long read, and cell free DNA sequence.
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2024-12-19 |
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mgkit
|
public |
Metagenomics Framework
|
2024-12-19 |
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tinker
|
public |
The Tinker molecular modeling software is a complete and general package for molecular mechanics and dynamics, with some special features for biopolymers
|
2024-12-19 |
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amplicontyper
|
public |
Tool for training model and classifying reads from environmental ONT amplicon sequencing.
|
2024-12-19 |
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mirscore
|
public |
miRScore: A rapid and precise microRNA validation tool
|
2024-12-19 |
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bioconductor-clustall
|
public |
ClustAll: Data driven strategy to robustly identify stratification of patients within complex diseases
|
2024-12-19 |
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bioconductor-bioccheck
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public |
Bioconductor-specific package checks
|
2024-12-19 |
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hostile
|
public |
Hostile: accurate host decontamination
|
2024-12-19 |
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svtk
|
public |
Utilities for consolidating, filtering, resolving, and annotating structural variants.
|
2024-12-19 |
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bioconductor-crimage
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public |
CRImage a package to classify cells and calculate tumour cellularity
|
2024-12-19 |
|
r-deconcell
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public |
DeconCell is an statitsical framework for generating cell proportions predictive models using bulk expresion data. It currently has pre-calculated models
|
2024-12-19 |
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bioconductor-spectra
|
public |
Spectra Infrastructure for Mass Spectrometry Data
|
2024-12-19 |
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bioconductor-pvca
|
public |
Principal Variance Component Analysis (PVCA)
|
2024-12-19 |
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ntlink
|
public |
Genome assembly scaffolder using long reads and minimizers
|
2024-12-19 |
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bioconductor-spia
|
public |
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations
|
2024-12-19 |
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r-nanostringnorm
|
public |
A set of tools for normalizing, diagnostics and visualization of NanoString nCounter data.
|
2024-12-19 |
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bioconductor-cola
|
public |
A Framework for Consensus Partitioning
|
2024-12-19 |
|
bioconductor-doscheda
|
public |
A DownStream Chemo-Proteomics Analysis Pipeline
|
2024-12-19 |
|
pygtftk
|
public |
The gtftk suite providing facilities to manipulate genomic annotations in gtf format.
|
2024-12-19 |
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bioconductor-interactivecomplexheatmap
|
public |
Make Interactive Complex Heatmaps
|
2024-12-19 |
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bioconductor-rvs
|
public |
Computes estimates of the probability of related individuals sharing a rare variant
|
2024-12-19 |
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bioconductor-lpnet
|
public |
Linear Programming Model for Network Inference
|
2024-12-19 |
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clair3-trio
|
public |
Clair3-Trio is a variants caller tailored for family trios from nanopore long-reads. Clair3-Trio employs a Trio-to-Trio deep neural network model that allows it to input all trio’s sequencing information and output all trio’s predicted variants within a single model, to perform far better variant calling. We also present MCVLoss, the first loss function that can improve variants calling in trios by leveraging the explicitly encoding of the priors of the Mendelian inheritance in trios. Clair3-Trio showed comprehensive improvement in experiments. It predicted much fewer Mendelian inheritance violation variations than current state-of-the-art methods.
|
2024-12-19 |
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bioconductor-affycontam
|
public |
structured corruption of affymetrix cel file data
|
2024-12-19 |
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ntsynt
|
public |
Detecting multi-genome synteny blocks using minimizer graph mapping
|
2024-12-19 |
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bioconductor-sparsearray
|
public |
High-performance sparse data representation and manipulation in R
|
2024-12-19 |
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bioconductor-flowdensity
|
public |
Sequential Flow Cytometry Data Gating
|
2024-12-19 |
|
bioconductor-optimalflow
|
public |
optimalFlow
|
2024-12-19 |
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bioconductor-rcwlpipelines
|
public |
Bioinformatics pipelines based on Rcwl
|
2024-12-19 |
