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dxpy
|
public |
DNAnexus Platform API bindings for Python
|
2024-11-08 |
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longcallr_nn
|
public |
longcallR_nn is a variant caller specifically designed for long-read RNA-seq data utilizing a ResNet model.
|
2024-11-08 |
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fastp
|
public |
A ultra-fast FASTQ preprocessor with full features (QC/adapters/trimming/filtering/splitting...)
|
2024-11-08 |
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evofr
|
public |
Tools for evolutionary forecasting
|
2024-11-08 |
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gadma
|
public |
Genetic Algorithm for Demographic Inference
|
2024-11-07 |
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bioblend
|
public |
A Python library for interacting with the Galaxy API.
|
2024-11-07 |
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snakemake-executor-plugin-slurm
|
public |
A Snakemake executor plugin for submitting jobs to a SLURM cluster.
|
2024-11-07 |
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centrifuger
|
public |
Lossless compression of microbial genomes for efficient and accurate metagenomic sequence classification.
|
2024-11-07 |
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pyopenms
|
public |
python bindings for OpenMS, an open-source software C++ library for LC-MS data management and analyses
|
2024-11-07 |
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bam2plot
|
public |
Plot of coverage from bam file
|
2024-11-07 |
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sigprofilermatrixgenerator
|
public |
SigProfiler matrix generator tool.
|
2024-11-07 |
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trtools
|
public |
Toolkit for genome-wide analysis of tandem repeats
|
2024-11-07 |
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varfish-cli
|
public |
Command line interface to VarFish via REST API
|
2024-11-06 |
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arcs
|
public |
Scaffolding genome sequence assemblies using linked or long reads
|
2024-11-06 |
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pyfamsa
|
public |
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
|
2024-11-06 |
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locityper
|
public |
Targeted genotyper for complex polymorphic loci from short and long read WGS.
|
2024-11-06 |
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ensembl-utils
|
public |
Ensembl Python general-purpose utils
|
2024-11-06 |
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zdb
|
public |
zDB is both a bacterial comparative genomics pipeline and a tool to visualize the results
|
2024-11-06 |
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bftools
|
public |
Bio-Formats Command line tools
|
2024-11-06 |
|
cuttlefish
|
public |
Construction of the compacted de Bruijn graph efficiently
|
2024-11-06 |
|
deepchopper-cli
|
public |
A CLI for Genomic Language Model for Chimera Artifact Detection in Nanopore Direct RNA Sequencing.
|
2024-11-06 |
|
deepchopper
|
public |
A Genomic Language Model for Chimera Artifact Detection in Nanopore Direct RNA Sequencing.
|
2024-11-06 |
|
cat
|
public |
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
|
2024-11-06 |
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table2asn
|
public |
table2asn is a command-line program that creates sequence records for submission to GenBank - replaces tbl2asn.
|
2024-11-05 |
|
rpsbproc
|
public |
RpsbProc, the post-RPSBLAST Processing Utility.
|
2024-11-05 |
|
pyjess
|
public |
Cython bindings and Python interface to JESS, a 3D template matching software.
|
2024-11-05 |
|
argparse2tool
|
public |
Instrument for forming Galaxy XML and CWL tool descriptions from argparse arguments
|
2024-11-05 |
|
gottcha2
|
public |
Genomic Origin Through Taxonomic CHAllenge (GOTTCHA) v2
|
2024-11-05 |
|
pangolin
|
public |
Phylogenetic Assignment of Named Global Outbreak LINeages
|
2024-11-05 |
|
gfastats
|
public |
The swiss army knife for genome assembly
|
2024-11-05 |
|
snipe
|
public |
SRA-Scale sequence QC and analysis
|
2024-11-05 |
|
perl-ole-storage_lite
|
public |
Read and write OLE storage files.
|
2024-11-05 |
|
gaftools
|
public |
gaftools is a fast and comprehensive toolkit designed for processing pangenome alignments in GAF format
|
2024-11-05 |
|
r-quilt
|
public |
Rapid and accurate genotype imputation from low coverage short read, long read, and cell free DNA sequence.
|
2024-11-05 |
|
seqspec
|
public |
File format that describes data generated from genomics experiments. File format and seqspec tool enable uniform processing of genomics data.
|
2024-11-05 |
|
konezumiaid
|
public |
This is used for automatically designing gRNAs for genome editing by Target-AID.
|
2024-11-05 |
|
snapatac2
|
public |
SnapATAC2: Single-cell epigenomics analysis pipeline.
|
2024-11-05 |
|
perl-devel-size
|
public |
Perl extension for finding the memory usage of Perl variables
|
2024-11-05 |
|
eva-sub-cli
|
public |
EVA Submission Command Line Interface
|
2024-11-05 |
|
perl-perl-unsafe-signals
|
public |
Allow unsafe handling of signals in selected blocks
|
2024-11-05 |
|
perl-socket6
|
public |
IPv6 related part of the C socket.h defines and structure manipulators
|
2024-11-05 |
|
perl-scalar-util-numeric
|
public |
numeric tests for perl scalars
|
2024-11-05 |
|
perl-class-xsaccessor
|
public |
Generate fast XS accessors without runtime compilation
|
2024-11-05 |
|
perl-url-encode
|
public |
Encoding and decoding of application/x-www-form-urlencoded encoding.
|
2024-11-05 |
|
perl-indirect
|
public |
Lexically warn about using the indirect method call syntax.
|
2024-11-05 |
|
perl-padwalker
|
public |
play with other peoples' lexical variables
|
2024-11-05 |
|
perl-time-hires
|
public |
High resolution alarm, sleep, gettimeofday, interval timers
|
2024-11-05 |
|
perl-json-create
|
public |
fast, minimal, UTF-8-only serialization of data to JSON
|
2024-11-05 |
|
perl-perlio-gzip
|
public |
PerlIO interface to gzip/gunzip
|
2024-11-05 |
|
perl-set-object
|
public |
Unordered collections (sets) of Perl Objects
|
2024-11-05 |
