|
ucsc-catuncomment
|
public |
Concatenate input removing lines that start with '#'.
|
2025-06-29 |
|
ucsc-chopfalines
|
public |
Read in FA file with long lines and rewrite it with shorter lines.
|
2025-06-29 |
|
ucsc-hgsqldump
|
public |
Execute mysqldump using passwords from .hg.conf.
|
2025-06-29 |
|
ucsc-hgloadmaf
|
public |
Load a maf file index into the database.
|
2025-06-29 |
|
ucsc-getrna
|
public |
Get mrna for GenBank or RefSeq sequences found in a database.
|
2025-06-29 |
|
ucsc-texthistogram
|
public |
Make a histogram in ascii.
|
2025-06-29 |
|
ucsc-gff3topsl
|
public |
Convert a GFF3 CIGAR file to a PSL file.
|
2025-06-29 |
|
ucsc-maftobigmaf
|
public |
Put ucsc standard maf file into bigMaf format.
|
2025-06-29 |
|
ucsc-mrnatogene
|
public |
Convert PSL alignments of mRNAs to gene annotations.
|
2025-06-29 |
|
ucsc-genepredtomafframes
|
public |
Create mafFrames tables from a genePreds.
|
2025-06-29 |
|
ucsc-genepredsinglecover
|
public |
Create single-coverage genePred files.
|
2025-06-29 |
|
oarfish
|
public |
oarfish is a tool for fast, accurate and versatile transcript quantification from long-read RNA-seq data
|
2025-06-29 |
|
r-restfulr
|
public |
Models a RESTful service as if it were a nested R list.
|
2025-06-28 |
|
ucsc-pslswap
|
public |
Swap target and query in psls.
|
2025-06-28 |
|
reactome-cli
|
public |
Reactome CLI bioconda
|
2025-06-28 |
|
ucsc-pslmrnacover
|
public |
Make histogram of coverage percentage of mRNA in psl.
|
2025-06-28 |
|
ucsc-pslcat
|
public |
Concatenate psl files.
|
2025-06-28 |
|
ucsc-pslreps
|
public |
Analyze repeats and generate genome-wide best alignments from a sorted set of local alignments.
|
2025-06-28 |
|
ucsc-pslscore
|
public |
Calculate web blat score from psl files.
|
2025-06-28 |
|
ucsc-pslselect
|
public |
Select records from a PSL file.
|
2025-06-28 |
|
ucsc-pslxtofa
|
public |
Convert pslx (with sequence) to fasta file.
|
2025-06-28 |
|
ucsc-pslfilter
|
public |
Filter out psl file.
|
2025-06-28 |
|
ucsc-psldropoverlap
|
public |
Deletes all overlapping self alignments.
|
2025-06-28 |
|
ucsc-parafetch
|
public |
Try to fetch url with multiple connections.
|
2025-06-28 |
|
ucsc-psltopslx
|
public |
Convert from psl to pslx format, which includes sequences.
|
2025-06-28 |
