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annembed
|
public |
annembed is an ultra-fast and scalable non-linear dimension reduction/embedding algorithm (similar to UMAP or t-SNE) for large-scale biological data
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2025-04-22 |
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sequali
|
public |
Fast sequencing quality metrics
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2025-04-22 |
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el_gato
|
public |
Perform Legionella pneumophila Sequence Based Typing (SBT) from short reads or assemblies.
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2025-04-22 |
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tides-ml
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public |
Tool for ORF-calling and ORF-classification using ML approaches.
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2025-04-22 |
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nordic
|
public |
NORDic: a Network-Oriented package for the Repurposing of Drugs
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2025-04-22 |
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omark
|
public |
OMArk - Proteome quality assesment based on OMAmer placements
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2025-04-22 |
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omamer
|
public |
OMAmer - tree-driven and alignment-free protein assignment to sub-families
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2025-04-22 |
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buscolite
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public |
buscolite: busco analysis for gene predictions.
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2025-04-22 |
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gapmm2
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public |
gapmm2: gapped alignment using minimap2.
|
2025-04-22 |
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mtm-align
|
public |
Align multiple protein structures
|
2025-04-22 |
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pytrf
|
public |
a fast Python package for finding tandem repeat sequences
|
2025-04-22 |
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gfftk
|
public |
GFFtk: genome annotation GFF3 tool kit
|
2025-04-22 |
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orthofisher
|
public |
Orthofisher is a broadly applicable tool for automated gene identification and retrieval.
|
2025-04-22 |
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flopp
|
public |
flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.
|
2025-04-22 |
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r-pspecterlib
|
public |
Proteomics R package for matching peaks in digested and intact proteomics
|
2025-04-22 |
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ucsc-chaincleaner
|
public |
Remove chain-breaking alignments from chains that break nested chains.
|
2025-04-22 |
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ucsc-pslsortacc
|
public |
Remove chain-breaking alignments from chains that break nested chains.
|
2025-04-22 |
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ucsc-chainscore
|
public |
Remove chain-breaking alignments from chains that break nested chains.
|
2025-04-22 |
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pysais
|
public |
Suffix array computation with induced sorting algorithm.
|
2025-04-22 |
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rmath4
|
public |
standalone Rmath library from R
|
2025-04-22 |
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colabfold
|
public |
ColabFold: making protein folding accessible to all
|
2025-04-22 |
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phantasm-xenogi
|
public |
xenoGI for PHANTASM
|
2025-04-22 |
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severus
|
public |
A tool for somatic structural variant calling using long reads
|
2025-04-22 |
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phylogenize
|
public |
Phylogenize is a tool that allows users to link microbial genes to environments, accounting for phylogeny.
|
2025-04-22 |
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comebin
|
public |
COMEBin allows effective binning of metagenomic contigs using COntrastive Multi-viEw representation learning
|
2025-04-22 |
