| Package Name | Access | Summary | Updated |
|---|---|---|---|
| openstructure | public | Open-Source Computational Structural Biology Framework. | 2025-08-11 |
| blast | public | BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++ Toolkit. | 2025-08-11 |
| steamboat | public | A collection of tools/scripts for microbial bioinformatics | 2025-08-11 |
| annembed | public | annembed is an ultra-fast and scalable non-linear dimension reduction/embedding algorithm (similar to UMAP or t-SNE) for large-scale biological data | 2025-08-11 |
| dnmtools | public | dnmtools is a set of tools for analyzing DNA methylation data from bisulfite sequencing. | 2025-08-11 |
| stringtie | public | StringTie employs efficient algorithms for transcript structure recovery and abundance estimation from bulk RNA-Seq reads aligned to a reference genome. | 2025-08-11 |
| teloscope | public | A telomere annotation tools for genome assemblies. | 2025-08-11 |
| spectral_hk | public | No Summary | 2025-08-11 |
| seqan_tcoffee | public | SeqAn::T-Coffee - Multiple Sequence Alignment | 2025-08-11 |
| karect | public | Read error correction tool based on multiple alignment. | 2025-08-10 |
| svmlight | public | SVMLight Library by Thorsten Joachim | 2025-08-10 |
| gvcf2coverage | public | Coverage extractor from gVCF files. | 2025-08-10 |
| kronik | public | No Summary | 2025-08-10 |
| megahit | public | MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph | 2025-08-10 |
| psipred | public | Protein Secondary Structure Predictor | 2025-08-10 |
| proda | public | ProDA - Multiple alignment of protein sequences with repeated and shuffled elements | 2025-08-10 |
| pybigwig | public | A python extension written in C for quick access to bigWig files. | 2025-08-10 |
| biofluff | public | Exploratory analysis and visualization of high-throughput sequencing data | 2025-08-10 |
| cloci | public | Co-occurrence Locus and Orthologous Cluster Identifier. | 2025-08-10 |
| ir | public | Program for Calculating the Repetitiveness of DNA Sequences | 2025-08-10 |
| jarvis | public | Efficient lossless compression of genomic sequences | 2025-08-10 |
| sts-smctc | public | A C++ template class library for the efficient and convenient implementation of very general Sequential Monte Carlo algorithms. | 2025-08-10 |
| gtfsort | public | A chr/pos/feature GTF sorter that uses a lexicographically-based index ordering algorithm. | 2025-08-10 |
| kallisto | public | Quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. | 2025-08-10 |
| ucsc-paratestjob | public | Version 12.18. | 2025-08-10 |
