| Package Name | Access | Summary | Updated |
|---|---|---|---|
| perl-inline-c | public | C Language Support for Inline. | 2025-08-19 |
| lumpy-sv-minimal | public | A general probabilistic framework for structural variant discovery. This package contains only the lumpy executable | 2025-08-19 |
| dxpy | public | DNAnexus Platform API bindings for Python | 2025-08-19 |
| nanoplot | public | Plotting suite for long read sequencing data and alignments. | 2025-08-19 |
| medaka | public | A tool to create consensus sequences and variant calls from nanopore sequencing data using neural networks. | 2025-08-19 |
| fastq-tools | public | A collection of fastq manipulation scripts written in C for speed. | 2025-08-19 |
| reditools3 | public | REDItools3 is an RNA editing detection tool implemented in Python3 for analyzing RNA-seq data. | 2025-08-19 |
| haplotaglr | public | Haplotagging individual long reads using known haplotype information. | 2025-08-19 |
| hisat2-pipeline | public | A pipeline to automatically run an RNA-seq analysis using HISAT2/Stringtie using default settings. | 2025-08-19 |
| ms2deepscore | public | Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity | 2025-08-19 |
| grz-cli | public | Tool for validation, encryption and upload of MV submissions to GDCs. | 2025-08-19 |
| taxburst | public | sunburst plots for taxonomy | 2025-08-19 |
| snakemake-storage-plugin-irods | public | A Snakemake plugin for handling input and output on iRODS. | 2025-08-19 |
| grz-pydantic-models | public | Pydantic models for the GRZ metadata schema | 2025-08-19 |
| grz-common | public | Common library for grz applications. | 2025-08-19 |
| pyspoa | public | Python binding to spoa library. | 2025-08-19 |
| hicap | public | In silico typing of the H. influenzae capsule locus | 2025-08-19 |
| seqkit | public | A cross-platform and ultrafast toolkit for FASTA/Q file manipulation. | 2025-08-19 |
| r-aroma.affymetrix | public | A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system. The only parameter that limits the number of chips that can be processed is the amount of available disk space. The Aroma Framework has successfully been used in studies to process tens of thousands of arrays. This package has actively been used since 2006. | 2025-08-19 |
| pypolca | public | Standalone Python re-implementation of the POLCA polisher from MaSuRCA | 2025-08-19 |
| hesslab-gambit | public | IMPORTANT: This recipe is out of date. Use "gambit" instead: http://bioconda.github.io/recipes/gambit/README.html | 2025-08-19 |
| ngsrelate | public | Software tool for estimating pairwise relatedness from next-generation sequencing data. | 2025-08-19 |
| pfp | public | Prefix Free Parsing. | 2025-08-19 |
| pbsim | public | No Summary | 2025-08-19 |
| r-phewas | public | Phenome Wide Association Studies (PheWAS) - Functions to perform Phenome Wide Association Studies (PheWAS). These functions include the conversion of ICD9 codes to PheWAS codes (v1.2), statistical analysis, and plotting. | 2025-08-19 |
