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Package Name Access Summary Updated
r-ggcoverage public The goal of 'ggcoverage' is to simplify the process of visualizing genome coverage. It contains functions to load data from BAM, BigWig or BedGraph files, create genome coverage plot, add various annotations to the coverage plot, including base and amino acid annotation, GC annotation, gene annotation, transcript annotation, ideogram annotation and peak annotation. 2024-12-26
bioconductor-hugene10stprobeset.db public Affymetrix hugene10 annotation data (chip hugene10stprobeset) 2024-12-26
trinity public Trinity assembles transcript sequences from Illumina RNA-Seq data. 2024-12-26
bioconductor-hgu95d.db public Affymetrix Affymetrix HG U95D Array annotation data (chip hgu95d) 2024-12-26
bioconductor-hgu95c.db public Affymetrix Affymetrix HG U95C Array annotation data (chip hgu95c) 2024-12-26
r-acidsinglecell public Toolkit for single-cell RNA-seq analysis that extends the functionality of SingleCellExperiment. 2024-12-26
bioconductor-pocrcannotation.db public A package containing metadata for POCRC arrays assembled using data from public repositories 2024-12-26
bioconductor-operonhumanv3.db public FHCRC Nelson Lab OperonHumanV3 Annotation Data (OperonHumanV3) assembled using data from public repositories 2024-12-26
r-bcbiobase public Base functions and generics for bcbio R packages. 2024-12-26
bioconductor-hthgu133plusa.db public Affymetrix Affymetrix HT_HG-U133_Plus_A Array annotation data (chip hthgu133plusa) 2024-12-26
bioconductor-tfhaz public Transcription Factor High Accumulation Zones 2024-12-26
bioconductor-hta20probeset.db public Affymetrix hta20 annotation data (chip hta20probeset) 2024-12-26
bioconductor-ribocrypt public Interactive visualization in genomics 2024-12-26
bioconductor-hgug4100a.db public Agilent Human 1 cDNA Microarray Kit annotation data (chip hgug4100a) assembled using data from public repositories 2024-12-26
iseq public iSeq is a Bash script that allows you to download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases. 2024-12-26
bioconductor-hgu133plus2.db public Affymetrix Affymetrix HG-U133_Plus_2 Array annotation data (chip hgu133plus2) 2024-12-26
bioconductor-fraser public Find RAre Splicing Events in RNA-Seq Data 2024-12-26
bioconductor-hthgu133a.db public Affymetrix Affymetrix HT_HG-U133A Array annotation data (chip hthgu133a) 2024-12-26
bioconductor-saser public Scalable Aberrant Splicing and Expression Retrieval 2024-12-26
bioconductor-hugene21sttranscriptcluster.db public Affymetrix hugene21 annotation data (chip hugene21sttranscriptcluster) 2024-12-26
bioconductor-hu6800.db public Affymetrix Affymetrix Hu6800 Array annotation data (chip hu6800) 2024-12-26
bioconductor-rnamodr.ml public Detecting patterns of post-transcriptional modifications using machine learning 2024-12-26
bioconductor-lapointe.db public A package containing metadata for LAPOINTE arrays assembled using data from public repositories 2024-12-26
bioconductor-rnamodr.ribomethseq public Detection of 2'-O methylations by RiboMethSeq 2024-12-26
bioconductor-hthgu133b.db public Affymetrix Affymetrix HT_HG-U133B Array annotation data (chip hthgu133b) 2024-12-26
bioconductor-rnamodr.alkanilineseq public Detection of m7G, m3C and D modification by AlkAnilineSeq 2024-12-26
bioconductor-hgug4101a.db public Agilent Human 2 cDNA Microarry Kit annotation data (chip hgug4101a) assembled using data from public repositories 2024-12-26
bioconductor-lumihumanall.db public Illumina Human Illumina expression annotation data (chip lumiHumanAll) assembled using data from public repositories 2024-12-26
bioconductor-epivizrdata public Data Management API for epiviz interactive visualization app 2024-12-26
bioconductor-illuminahumanv4.db public Illumina HumanHT12v4 annotation data (chip illuminaHumanv4) assembled using data from public repositories 2024-12-26
bioconductor-nugohs1a520180.db public Affymetrix nugohs1a520180 annotation data (chip nugohs1a520180) assembled using data from public repositories 2024-12-26
bioconductor-compepitools public Tools for computational epigenomics 2024-12-26
bioconductor-hgfocus.db public Affymetrix Affymetrix HG-Focus Array annotation data (chip hgfocus) 2024-12-26
bioconductor-listeretalbsseq public BS-seq data of H1 and IMR90 cell line excerpted from Lister et al. 2009 2024-12-26
bioconductor-hgu133a2.db public Affymetrix Affymetrix HG-U133A_2 Array annotation data (chip hgu133a2) 2024-12-26
bioconductor-extrachips public Additional functions for working with ChIP-Seq data 2024-12-26
bioconductor-clariomdhumanprobeset.db public Affymetrix clariomdhuman annotation data (chip clariomdhumanprobeset) 2024-12-26
bioconductor-hguatlas13k.db public Clontech BD Atlas Long Oligos Human 13K annotation data (chip hguatlas13k) assembled using data from public repositories 2024-12-26
bioconductor-hu35ksubc.db public Affymetrix Affymetrix Hu35KsubC Array annotation data (chip hu35ksubc) 2024-12-26
bioconductor-clariomdhumantranscriptcluster.db public Affymetrix clariomdhuman annotation data (chip clariomdhumantranscriptcluster) 2024-12-26
bioconductor-cocoa public Coordinate Covariation Analysis 2024-12-26
bioconductor-hgu95e.db public Affymetrix Affymetrix HG U95E Array annotation data (chip hgu95e) 2024-12-26
bioconductor-hta20transcriptcluster.db public Affymetrix hta20 annotation data (chip hta20transcriptcluster) 2024-12-26
bioconductor-methylsig public MethylSig: Differential Methylation Testing for WGBS and RRBS Data 2024-12-26
bioconductor-hgu95a.db public Affymetrix Affymetrix HG U95A Array annotation data (chip hgu95a) 2024-12-26
bioconductor-borealis public Bisulfite-seq OutlieR mEthylation At singLe-sIte reSolution 2024-12-26
bioconductor-hgu95av2.db public Affymetrix Affymetrix HG U95Av2 Array annotation data (chip hgu95av2) 2024-12-26
r-acidexperiment public Toolkit to extend the functionality of SummarizedExperiment. 2024-12-26
bioconductor-hgudkfz31.db public Unknown annotation data (chip hguDKFZ31) assembled using data from public repositories 2024-12-26
bioconductor-vtpnet public variant-transcription factor-phenotype networks 2024-12-26
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