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perl-bio-easel
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public |
Perl modules and scripts for interfacing with Sean Eddy's C easel sequence analysis library using Perl's Inline.
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2025-09-03 |
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biobb_common
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public |
Biobb_common is the base package required to use the biobb packages.
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2025-09-03 |
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cycle_finder
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public |
A de novo analysis tool for tandem and interspersed repeats based on cycle-finding
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2025-09-03 |
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probeit
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public |
Probeit: a probe designer for detecting and genotyping pathogen!!!
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2025-09-02 |
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genomedata
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public |
Tools for accessing large amounts of genomic data.
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2025-09-02 |
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quip
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public |
Aggressive compression of FASTQ and SAM/BAM files.
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2025-09-02 |
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pureclip
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public |
PureCLIP is a tool to detect protein-RNA interaction footprints from single-nucleotide CLIP-seq data, such as iCLIP and eCLIP.
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2025-09-02 |
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bacpage
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public |
An easy-to-use pipeline for the assembly and analysis of bacterial genomes.
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2025-09-02 |
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verticall
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public |
A tool for building recombination-free trees.
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2025-09-02 |
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predicthaplo
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public |
This software aims at reconstructing haplotypes from next-generation sequencing data.
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2025-09-02 |
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deeplc
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public |
DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
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2025-09-02 |
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sequana_pipetools
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public |
A set of tools to help building or using Sequana pipelines
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2025-09-02 |
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deacon
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public |
Fast alignment-free sequence filter
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2025-09-02 |
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perl-term-table
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public |
Format a header and rows into a table
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2025-09-02 |
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haplotype-lso
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public |
Haplotype Candidatus Liberibacter solanacearum (Lso) samples from targeted amplicon capillary sequencing data
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2025-09-02 |
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sequip
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public |
Perl module for biological sequence analysis and supporting utilities..
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2025-09-02 |
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markov_genome
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public |
A Rust package for Markov chain sequence simulation.
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2025-09-02 |
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versionix
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public |
Get version of any tools.
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2025-09-02 |
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varlociraptor
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public |
Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.
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2025-09-02 |
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nbitk
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public |
nbitk: Naturalis BioInformatics ToolKit
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2025-09-02 |
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seqspec
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public |
File format that describes data generated from genomics experiments. File format and seqspec tool enable uniform processing of genomics data.
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2025-09-02 |
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centrifuger
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public |
Lossless compression of microbial genomes for efficient and accurate metagenomic sequence classification.
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2025-09-02 |
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sshash
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public |
SSHash is a compressed dictionary data structure for k-mers (strings of length k over the DNA alphabet {A,C,G,T}), based on Sparse and Skew Hashing.
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2025-09-02 |
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r-shinyngs
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public |
Provides Shiny applications for various array and NGS applications. Currently very RNA-seq centric, with plans for expansion.
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2025-09-02 |
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rgi
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public |
This tool provides a preliminary annotation of your DNA sequence(s) based upon the data available in The Comprehensive Antibiotic Resistance Database (CARD). Hits to genes tagged with Antibiotic Resistance ontology terms will be highlighted. As CARD expands to include more pathogens, genomes, plasmids, and ontology terms this tool will grow increasingly powerful in providing first-pass detection of antibiotic resistance associated genes. See license at CARD website.
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2025-09-01 |
