| Package Name | Access | Summary | Updated |
|---|---|---|---|
| pykofamsearch | public | Fast implementation of HMMSEARCH optimized for high-memory systems using PyHmmer. | 2025-09-08 |
| finaletoolkit | public | Extract cfDNA fragmentation features from sequencing data. | 2025-09-08 |
| perl-set-object | public | Unordered collections (sets) of Perl Objects | 2025-09-08 |
| adapterremoval | public | The AdapterRemoval v2 tool for merging and clipping reads. | 2025-09-08 |
| vsnp3 | public | Rapidly call, validate, and compare SNPs from FASTQ files in a timely manner utilizing large data sets. | 2025-09-08 |
| sdm | public | sdm - simple demultiplex tool for FASTQ demultiplexing and dereplication. | 2025-09-08 |
| perl-convert-binary-c | public | Binary Data Conversion using C Types | 2025-09-08 |
| perl-json-xs | public | JSON serialising/deserialising, done correctly and fast | 2025-09-08 |
| savvy | public | Interface to various variant calling formats. | 2025-09-08 |
| r-saige | public | SAIGE is an R package with Scalable and Accurate Implementation of Generalized mixed model (Chen, H. et al. 2016) | 2025-09-08 |
| nextflow | public | A DSL for data-driven computational pipelines http://nextflow.io | 2025-09-08 |
| compleasm | public | Compleasm: a faster and more accurate reimplementation of BUSCO | 2025-09-08 |
| biobb_mem | public | Biobb_mem is the Biobb module for membrane structure analysis. | 2025-09-08 |
| biobb_analysis | public | Biobb_analysis is the Biobb module collection to perform analysis of molecular dynamics simulations. | 2025-09-08 |
| predictosaurus | public | Predictosaurus is a command-line tool designed for uncertainty-aware haplotype-based genomic variant effect prediction. | 2025-09-07 |
| skder | public | skDER & CiDDER: efficient & high-resolution dereplication methods for microbial genomes | 2025-09-07 |
| pyhmmsearch | public | Fast implementation of HMMSEARCH optimized for high-memory systems using PyHmmer. | 2025-09-07 |
| pmidcite | public | Download "Cited by" data from the NIH for any paper with a PubMed ID | 2025-09-07 |
| fastplong | public | Ultra-fast preprocessing and quality control for long-read sequencing data. | 2025-09-07 |
| unetcoreograph | public | UNetCoreograph - Automated segmentation of nuclei in 3D imaging data. | 2025-09-07 |
| pear | public | paired-end read merger | 2025-09-07 |
| mgikit | public | mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports. | 2025-09-07 |
| sawfish | public | Joint structural variant and copy number variant caller for HiFi sequencing data | 2025-09-07 |
| igv | public | Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations. | 2025-09-07 |
| multiqc | public | Create aggregate bioinformatics analysis reports across many samples and tools. | 2025-09-06 |
