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reneo
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public |
Reneo: Unraveling Viral Genomes from Metagenomes
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2024-09-23 |
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checkm-genome
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public |
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes.
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2024-09-23 |
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bactopia
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public |
Bactopia is a flexible pipeline for complete analysis of bacterial genomes.
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2024-09-22 |
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fastlin
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public |
fastlin, ultra-fast MTBC lineage typing
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2024-09-22 |
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perl-minion
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public |
Job queue
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2024-09-21 |
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recognizer
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public |
A tool for domain based annotation with the COG database
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2024-09-21 |
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eukfinder
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public |
Eukfinder is a tool for detecting eukaryotic sequences in metagenomic data.
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2024-09-21 |
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bactopia-qc
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public |
The methods used in Bactopia for read QC
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2024-09-21 |
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percolator
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public |
Semi-supervised learning for peptide identification from shotgun proteomics datasets.
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2024-09-20 |
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phylodeep
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public |
Deep-learning parameter estimation and model selection from phylogenetic trees.
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2024-09-20 |
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fastq-screen
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public |
FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect.
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2024-09-20 |
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seurat-scripts
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public |
A set of wrappers for individual components of the Seurat package.
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2024-09-20 |
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busco_phylogenomics
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public |
Utility script to construct species phylogenies using BUSCO proteins.
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2024-09-20 |
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peptides
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public |
Physicochemical properties, indices and descriptors for amino-acid sequences.
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2024-09-19 |
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scarches
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public |
Transfer learning with Architecture Surgery on Single-cell data
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2024-09-19 |
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superdsm
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public |
SuperDSM is a globally optimal segmentation method based on superadditivity and deformable shape models for cell nuclei in fluorescence microscopy images and beyond.
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2024-09-19 |
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methylartist
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public |
Tools for parsing and plotting nanopore methylation data
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2024-09-19 |
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igv-reports
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public |
Creates self-contained html pages for visual variant review with IGV (igv.js).
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2024-09-18 |
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repeatmasker
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public |
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
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2024-09-17 |
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genomepy
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public |
Install and use genomes & gene annotations the easy way!
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2024-09-17 |
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hylight
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public |
Strain aware assembly of low coverage metagenomes.
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2024-09-17 |
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transanno
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public |
accurate VCF/GFF3/GTF LiftOver tool for new genome assemblies
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2024-09-17 |
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biophi
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public |
BioPhi open-source antibody design platform.
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2024-09-17 |
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fiji-omero_ij
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public |
ImageJ / Fiji plugin to visualize and manipulate both image data and metadata maintained at an OMERO server site.
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2024-09-17 |
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mirtop
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public |
Small RNA-seq annotation.
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2024-09-17 |
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cellprofiler-core
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public |
Dependency for CellProfiler v4.
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2024-09-17 |
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microhapulator
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public |
Tools for empirical microhaplotype calling, forensic interpretation, and simulation.
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2024-09-17 |
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pathphynder
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public |
A workflow for ancient DNA placement into reference phylogenies.
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2024-09-17 |
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cnv_facets
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public |
Detect somatic copy number variants (CNV) in tumour-normal samples using next generation sequencing data
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2024-09-17 |
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hackgap
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public |
hackgap (hash-based counting of k-mers with gaps) provides a fast jit-compiled k-kmer counter which supports gapped k-mers.
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2024-09-16 |
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pymsaviz
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public |
MSA visualization python package for sequence analysis
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2024-09-15 |
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zga
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public |
Prokaryotic genome assembly and annotation pipeline
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2024-09-13 |
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cellxgene
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public |
Web application for exploration of large scale scRNA-seq datasets
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2024-09-13 |
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bioconvert
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public |
Convert between bioinformatics formats
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2024-09-13 |
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anglerfish
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public |
Anglerfish, a tool to demultiplex Illumina libraries from ONT data
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2024-09-13 |
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micom
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public |
Microbial community modeling based on cobrapy.
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2024-09-12 |
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irescue
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public |
A tool to quantify transposable elements expression in scRNA-seq.
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2024-09-12 |
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checkqc
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public |
A simple program to parse Illumina NGS data and check it for quality criteria.
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2024-09-12 |
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geofetch
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public |
Downloads data and metadata from GEO and SRA and creates standard PEPs.
|
2024-09-11 |
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callingcardstools
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public |
An API and collection of cmd line tools to work with calling cards sequencing data
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2024-09-11 |
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tribal
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public |
TRIBAL is a package to infer B cell lineage trees from single-cell RNA sequencing data.
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2024-09-11 |
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schpl
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public |
Hierarchical progressive learning pipeline for single-cell RNA-sequencing datasets
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2024-09-11 |
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diphase
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public |
A diploid genome phasing tool
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2024-09-11 |
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synapseclient
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public |
Python client for Synapse
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2024-09-10 |
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toulligqc
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public |
A post sequencing QC tool for Oxford Nanopore sequencers.
|
2024-09-10 |
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duplex-tools
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public |
Duplex Tools contains a set of utilities for dealing with ONT Duplex sequencing data.
|
2024-09-10 |
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xengsort
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public |
A fast xenograft read sorter based on space-efficient k-mer hashing
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2024-09-10 |
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pod5
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public |
Oxford Nanopore Technologies Pod5 File Format Python API and Tools.
|
2024-09-10 |
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mtnucratio
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public |
A small tool to determine MT to Nuclear ratios for NGS data.
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2024-09-10 |
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lib-pod5
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public |
Python bindings for the POD5 file format.
|
2024-09-10 |
