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gene-trajectory-python
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public |
Compute gene trajectories
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2024-10-19 |
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mtgrasp
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public |
reference-grade de novo animal mitochondrial genome assembly and standardization
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2024-10-19 |
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pyteomics
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public |
A framework for proteomics data analysis.
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2024-10-18 |
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biocode
|
public |
Bioinformatics code libraries and scripts
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2024-10-17 |
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umicollapse
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public |
Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI).
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2024-10-17 |
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biobb_cmip
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public |
Biobb_cmip is the Biobb module collection to compute classical molecular interaction potentials.
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2024-10-17 |
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flexi-formatter
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public |
Moving flexiplex barcode and UMI to bam tags
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2024-10-16 |
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pneumo-typer
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public |
Pneumo-Typer: An integrated tool for simultaneous identification of serotype, sequence type, and capsule genotype in Streptococcus pneumoniae.
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2024-10-16 |
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rseqc
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public |
QC package for RNA-seq data.
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2024-10-16 |
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afpdb
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public |
A Numpy-based PDB structure manipulation package
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2024-10-15 |
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r-chromvarmotifs
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public |
Stores several motifs as PWMatrixList objects for use in R with packages like motifmatchr and chromVAR.
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2024-10-15 |
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sourcepredict
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public |
Classification and prediction of the origin of metagenomic samples.
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2024-10-14 |
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meta_eukaryome_detect
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public |
Pathogen, Parasite, Eukaryote and Virus detection in metagenomes.
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2024-10-14 |
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fragpipe
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public |
Pipeline for comprehensive analysis of shotgun proteomics data
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2024-10-12 |
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cenote-taker3
|
public |
Cenote-Taker 3: Discover and annotate the virome
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2024-10-12 |
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medaka
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public |
A tool to create consensus sequences and variant calls from nanopore sequencing data using neural networks.
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2024-10-11 |
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biobb_common
|
public |
Biobb_common is the base package required to use the biobb packages.
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2024-10-11 |
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sizemeup
|
public |
A simple tool to determine the genome size of an organism
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2024-10-11 |
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pyfaidx
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public |
pyfaidx: efficient pythonic random access to fasta subsequences
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2024-10-10 |
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querynator
|
public |
Python package to query cancer variant databases
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2024-10-10 |
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pantax
|
public |
Strain-level taxonomic classification of metagenomic data using pangenome graphs
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2024-10-10 |
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picard
|
public |
Java tools for working with NGS data in the BAM format
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2024-10-10 |
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picard-slim
|
public |
Java tools for working with NGS data in the BAM format.
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2024-10-10 |
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sipros
|
public |
Tools for stable isotopic mass spectrometry-based metaproteomics
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2024-10-09 |
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patchify
|
public |
A library that helps you split image into small, overlappable patches, and merge patches back into the original image.
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2024-10-09 |
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woltka
|
public |
versatile meta-omic data classifier
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2024-10-09 |
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scitrack
|
public |
SciTrack provides basic logging capabilities to track scientific computations.
|
2024-10-08 |
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get_mnv
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public |
Tool to identify Multi-Nucleotide Variants (MNVs) in genomic sequences.
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2024-10-08 |
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pgscatalog.match
|
public |
Tools for matching variants in PGS scoring files and target variant information files.
|
2024-10-08 |
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ngs-tools
|
public |
Reusable tools for working with next-generation sequencing (NGS) data
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2024-10-08 |
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mutamr
|
public |
Stripped down tool for generation of annotated vcf from paired-end reads in a CPHL.
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2024-10-08 |
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pgscatalog.calc
|
public |
Libraries and applications for working with calculated polygenic scores
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2024-10-07 |
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vclean
|
public |
vClean: Assessing the contamination of viral genomes
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2024-10-07 |
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parebrick
|
public |
A bioinf tool for finding genome rearrangements in bacterial genomes.
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2024-10-07 |
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mini3di
|
public |
A NumPy port of the foldseek code for encoding protein structures to 3di.
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2024-10-07 |
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heliano
|
public |
HELIANO: A fast and accurate tool for detection of Helitron-like elements
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2024-10-07 |
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fastaptamer
|
public |
A Bioinformatic Toolkit for High-Throughput Sequence Analysis of Combinatorial Selections
|
2024-10-07 |
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snakemake-storage-plugin-gcs
|
public |
A Snakemake storage plugin for Google Cloud Storage
|
2024-10-07 |
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pyliftover
|
public |
Pure-python implementation of UCSC ``liftOver`` genome coordinate conversion.
|
2024-10-07 |
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galaxy_sequence_utils
|
public |
Sequence Utilities from the Galaxy project
|
2024-10-07 |
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orthofinder
|
public |
Accurate inference of orthogroups, orthologues, gene trees and rooted species tree made easy!
|
2024-10-07 |
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panaroo
|
public |
panaroo - an updated pipeline for pangenome investigation
|
2024-10-07 |
|
phables
|
public |
Phables: from fragmented assemblies to high-quality bacteriophage genomes
|
2024-10-04 |
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snakemake-interface-report-plugins
|
public |
This package provides a stable interface for interactions between Snakemake and its report plugins.
|
2024-10-04 |
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protgraph
|
public |
ProtGraph, a graph generator for proteins.
|
2024-10-04 |
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snakemake-interface-common
|
public |
Common functions and classes for Snakemake and its plugins
|
2024-10-04 |
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tracs
|
public |
Tracs - Fast pairwise transmission inference from single genome and/or metagenomic data
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2024-10-03 |
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pysradb
|
public |
Python package for retrieving metadata and downloading datasets from SRA/ENA/GEO
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2024-10-03 |
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spec2vec
|
public |
Word2Vec based similarity measure of mass spectrometry data.
|
2024-10-03 |
|
verkko
|
public |
A hybrid genome assembly pipeline developed for telomere-to-telomere assembly of accurate (HiFi, ONT Duplex, ONT HERRO) and long (ONT UL) reads.
|
2024-10-03 |
