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r-remapenrich
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public |
Bioinformatics tools to compute statistical enrichment of geonomic regions for ReMap peaks
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2024-11-10 |
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gadma
|
public |
Genetic Algorithm for Demographic Inference
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2024-11-07 |
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bioblend
|
public |
A Python library for interacting with the Galaxy API.
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2024-11-07 |
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bam2plot
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public |
Plot of coverage from bam file
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2024-11-07 |
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sigprofilermatrixgenerator
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public |
SigProfiler matrix generator tool.
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2024-11-07 |
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trtools
|
public |
Toolkit for genome-wide analysis of tandem repeats
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2024-11-07 |
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zdb
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public |
zDB is both a bacterial comparative genomics pipeline and a tool to visualize the results
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2024-11-06 |
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bftools
|
public |
Bio-Formats Command line tools
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2024-11-06 |
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argparse2tool
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public |
Instrument for forming Galaxy XML and CWL tool descriptions from argparse arguments
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2024-11-05 |
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pangolin
|
public |
Phylogenetic Assignment of Named Global Outbreak LINeages
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2024-11-05 |
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snipe
|
public |
SRA-Scale sequence QC and analysis
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2024-11-05 |
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perl-ole-storage_lite
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public |
Read and write OLE storage files.
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2024-11-05 |
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seqspec
|
public |
File format that describes data generated from genomics experiments. File format and seqspec tool enable uniform processing of genomics data.
|
2024-11-05 |
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perl-url-encode
|
public |
Encoding and decoding of application/x-www-form-urlencoded encoding.
|
2024-11-05 |
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bubblegun
|
public |
BubbleGun is a tool for detecting bubbles and superbubbles in GFA graphs, and reports them and their nested structures.
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2024-11-05 |
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tinscan
|
public |
Find alignment signatures characteristic of transposon insertion sites.
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2024-11-05 |
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decom
|
public |
decOM: Similarity-based microbial source tracking for contamination assessment of ancient oral samples using k-mer-based methods
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2024-11-05 |
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tiberius
|
public |
Tiberius is a programme for quantifying and analysing genetic sequence data.
|
2024-11-04 |
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mimeo
|
public |
Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.
|
2024-11-04 |
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buscolite
|
public |
buscolite: busco analysis for gene predictions
|
2024-11-04 |
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nf-test
|
public |
nf-test is a simple test framework for Nextflow pipelines.
|
2024-11-04 |
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gfftk
|
public |
GFFtk: genome annotation GFF3 tool kit
|
2024-11-04 |
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eagle2
|
public |
The Eagle software estimates haplotype phase either within a genotyped cohort or using a phased reference panel.
|
2024-11-04 |
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bioutils
|
public |
miscellaneous simple bioinformatics utilities and lookup tables
|
2024-11-04 |
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msa4u
|
public |
A simple visualisation tool for Multiple Sequence Alignment.
|
2024-11-03 |
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seqkit
|
public |
a cross-platform and ultrafast toolkit for FASTA/Q file manipulation
|
2024-11-03 |
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gsmap
|
public |
gsMap (genetically informed spatial mapping of cells for complex traits)
|
2024-11-02 |
|
taxonkit
|
public |
A Cross-platform and Efficient NCBI Taxonomy Toolkit
|
2024-11-02 |
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csvtk
|
public |
A cross-platform, efficient, practical CSV/TSV toolkit
|
2024-11-02 |
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fgsv
|
public |
Tools to find evidence for structural variation.
|
2024-11-02 |
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fgbio
|
public |
A set of tools for working with genomic and high throughput sequencing data, including UMIs
|
2024-11-02 |
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lotus2
|
public |
LotuS2 is a lightweight complete 16S/18S/ITS pipeline
|
2024-11-02 |
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fgbio-minimal
|
public |
A set of tools for working with genomic and high throughput sequencing data, including UMIs
|
2024-11-02 |
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phykit
|
public |
PhyKIT is a UNIX shell toolkit for processing and analyzing phylogenomic data.
|
2024-10-31 |
|
tirmite
|
public |
Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.
|
2024-10-31 |
|
gatk4-spark
|
public |
Genome Analysis Toolkit (GATK4)
|
2024-10-31 |
|
gatk4
|
public |
Genome Analysis Toolkit (GATK4)
|
2024-10-31 |
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gcnvkernel
|
public |
Python package to support GATK gCNV calling.
|
2024-10-31 |
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spring
|
public |
Spring is a compression tool for Fastq files
|
2024-10-30 |
|
r-recetox-aplcms
|
public |
apLCMS is a software which generates a feature table from a batch of LC/MS spectra. A modified fork of the original apLCMS by Tianwei Yu.
|
2024-10-30 |
|
r-mfassignr
|
public |
The MFAssignR package was designed for multi-element molecular formula (MF)
assignment of ultrahigh resolution mass spectrometry measurements.
A number of tools for internal mass recalibration, MF assignment, signal-to-noise evaluation,
and unambiguous formula selections are provided.
|
2024-10-30 |
|
ampd-up
|
public |
De novo antimicrobial peptide sequence generation with recurrent neural networks
|
2024-10-30 |
|
doubletdetection
|
public |
Method to detect and enable removal of doublets from single-cell RNA-sequencing.
|
2024-10-30 |
|
phenograph
|
public |
Graph-based clustering for high-dimensional single-cell data.
|
2024-10-29 |
|
stxtyper
|
public |
Accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.
|
2024-10-29 |
|
pyscenic
|
public |
Python implementation of the SCENIC pipeline for transcription factor inference from single-cell transcriptomics experiments.
|
2024-10-29 |
|
geosketch
|
public |
Geometry-preserving random sampling.
|
2024-10-29 |
|
pbsv
|
public |
pbsv - PacBio structural variant (SV) calling and analysis tools
|
2024-10-29 |
|
pbtk
|
public |
pbtk - PacBio BAM toolkit
|
2024-10-29 |
|
pbmarkdup
|
public |
pbmarkdup - Mark duplicate reads from PacBio sequencing of an amplified library
|
2024-10-29 |
