| Package Name | Access | Summary | Updated |
|---|---|---|---|
| bioconductor-cardinalio | public | Read and write mass spectrometry imaging files | 2025-04-22 |
| insilicosv | public | Simulator for complex structural variants | 2025-04-22 |
| bioconductor-tsar | public | Thermal Shift Analysis in R | 2025-04-22 |
| bioconductor-dcats | public | Differential Composition Analysis Transformed by a Similarity matrix | 2025-04-22 |
| bioconductor-clustirr | public | Clustering of immune receptor repertoires | 2025-04-22 |
| bioconductor-compspot | public | compSPOT: Tool for identifying and comparing significantly mutated genomic hotspots | 2025-04-22 |
| bioconductor-biocartaimage | public | BioCarta Pathway Images | 2025-04-22 |
| bioconductor-plasmut | public | Stratifying mutations observed in cell-free DNA and white blood cells as germline, hematopoietic, or somatic | 2025-04-22 |
| shortseq | public | \ ShortSeqs are compact and efficient Python objects that hold short sequences while using up to 73% less memory compared to built-in types. They have a pre-computed hash value, can be compared for equality, and are easily converted back to the original sequence string. | 2025-04-22 |
| nextclade2 | public | Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement | 2025-04-22 |
| poly-qtlseq | public | PolyploidQtlSeq is a program that extends QTL-seq for polyploid F1 populations. | 2025-04-22 |
| hifihla | public | An HLA star-calling tool for PacBio HiFi data types | 2025-04-22 |
| lrsim | public | Simulator for 10X Genomics Linked Reads | 2025-04-22 |
| sequenoscope | public | sequenoscope is a versatile bioinformatic pipeline for the analysis of sequencing data. | 2025-04-22 |
| pymochi | public | Neural networks to quantify energies, energetic couplings, epistasis and allostery from deep mutational scanning data | 2025-04-22 |
| slow5curl | public | Tool for accessing remote BLOW5 files. | 2025-04-22 |
| dodge | public | Dynamic Outbreak Detection for Genomic Epidemiology. Automated point source bacterial outbreak detection using cumulative long term genomic surveillance. | 2025-04-22 |
| boms | public | Cell Segmentation for Spatial Transcriptomics Data using BOMS | 2025-04-22 |
| hpcblast | public | A wrapper for NCBI-BLAST+ suite which provides a simple and efficient method to accelerate the blast search | 2025-04-22 |
| peaks2utr | public | A robust, parallelized Python CLI for annotating three_prime_UTR | 2025-04-22 |
| reneo | public | Reneo: Unraveling Viral Genomes from Metagenomes | 2025-04-22 |
| bedgovcf | public | A simple tool to convert BED files to VCF files | 2025-04-22 |
| tides-ml | public | Tool for ORF-calling and ORF-classification using ML approaches. | 2025-04-22 |
| mtm-align | public | Align multiple protein structures | 2025-04-22 |
| pytrf | public | a fast Python package for finding tandem repeat sequences | 2025-04-22 |
