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ucsc-xmltosql
|
public |
Convert XML dump into a fairly normalized relational database
|
2024-12-12 |
|
dligand2
|
public |
DLIGAND2 is a knowledge-based method to predict protein-ligand binding affinity based on a distance-scaled, finite, ideal-gas reference (DFIRE) state.
|
2024-12-12 |
|
ucsc-pslfilter
|
public |
filter out psl file
|
2024-12-12 |
|
salmon
|
public |
Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
|
2024-12-12 |
|
ucsc-fatotwobit
|
public |
Convert DNA from fasta to 2bit format.
|
2024-12-12 |
|
ucsc-pslreps
|
public |
Analyze repeats and generate genome-wide best alignments from a
|
2024-12-12 |
|
svmlight
|
public |
SVMLight Library by Thorsten Joachim
|
2024-12-12 |
|
ucsc-parahubstop
|
public |
version 12.18
|
2024-12-12 |
|
r-qorts
|
public |
QoRTs toolkit for analysis, quality control, and data management of RNA-Seq
datasets.
|
2024-12-12 |
|
ucsc-genepredtogtf
|
public |
Convert genePred table or file to gtf.
|
2024-12-12 |
|
ucsc-taillines
|
public |
add tail to each line of file
|
2024-12-12 |
|
verifyidintensity
|
public |
verifyIDintensity detects and estimates sample contamination using intensity data from Illumina genotyping arrays.
|
2024-12-12 |
|
ucsc-mafsplitpos
|
public |
Pick positions to split multiple alignment input files
|
2024-12-12 |
|
peregrine-2021
|
public |
A genome assembler designed for long-reads that have good enough accuracy
|
2024-12-12 |
|
r-rrbgen
|
public |
A lightweight limited functionality R bgen read/write library
|
2024-12-12 |
|
dinamo
|
public |
An exact and efficient method for IUPAC motif discovery in DNA sequences
|
2024-12-12 |
|
ucsc-netchainsubset
|
public |
Create chain file with subset of chains that appear in the net
|
2024-12-12 |
|
kmergenie
|
public |
KmerGenie estimates the best k-mer length for genome de novo assembly
|
2024-12-12 |
|
ucsc-bedremoveoverlap
|
public |
Remove overlapping records from a (sorted) bed file. Gets rid of
|
2024-12-12 |
|
pyspoa
|
public |
Python binding to spoa library.
|
2024-12-12 |
|
rtk
|
public |
rtk - rarefaction toolkit for OTU tables
|
2024-12-12 |
|
pyabpoa
|
public |
pyabpoa: SIMD-based partial order alignment using adaptive band
|
2024-12-12 |
|
pear
|
public |
paired-end read merger
|
2024-12-12 |
|
ucsc-pslstats
|
public |
collect statistics from a psl file.
|
2024-12-12 |
|
ucsc-netfilter
|
public |
Filter out parts of net. What passes
|
2024-12-12 |
|
tssar
|
public |
No Summary
|
2024-12-12 |
|
skesa
|
public |
Strategic Kmer Extension for Scrupulous Assemblies & Sequence Assembly Using Target Enrichment
|
2024-12-12 |
|
perl-xml-libxslt
|
public |
Interface to GNOME libxslt library
|
2024-12-12 |
|
poseidon-xerxes
|
public |
A tool (xerxes) to analyse genotype databases formatted using Poseidon.
|
2024-12-12 |
|
mwga-utils
|
public |
Collection of utilities for processing Multispecies Whole Genome Alignments
|
2024-12-12 |
|
renano
|
public |
RENANO is a FASTQ lossless reference-based compression algorithm especially designed for nanopore sequencing FASTQ files.
|
2024-12-12 |
|
ucsc-nettobed
|
public |
Convert target coverage of net to a bed file.
|
2024-12-12 |
|
skc
|
public |
Shared k-mer content between two genomes
|
2024-12-12 |
|
tn93
|
public |
This is a simple program meant to compute pairwise distances between aligned nucleotide sequences in sequential FASTA format using the Tamura Nei 93 distance.
|
2024-12-12 |
|
sambamba
|
public |
Tools for working with SAM/BAM data
|
2024-12-12 |
|
migraine
|
public |
Implements coalescent algorithms for maximum likelihood analysis of population genetic data. The data currently handled are allelic counts but sequences will be handled in the forthcoming version.
|
2024-12-12 |
|
bowtie2
|
public |
A fast and sensitive gapped read aligner.
|
2024-12-12 |
|
libbambamc
|
public |
No Summary
|
2024-12-12 |
|
rnasnp
|
public |
No Summary
|
2024-12-12 |
|
novoalign
|
public |
Powerful tool designed for mapping of short reads onto a reference genome from Illumina, Ion Torrent, and 454 NGS platforms
|
2024-12-12 |
|
ucsc-nettoaxt
|
public |
Convert net (and chain) to axt.
|
2024-12-12 |
|
psmc
|
public |
This software package infers population size history from a diploid sequence using the Pairwise Sequentially Markovian Coalescent (PSMC) model
|
2024-12-12 |
|
faqcs
|
public |
Quality Control of Next Generation Sequencing Data.
|
2024-12-12 |
|
samhaplotag
|
public |
Processes haplotag barcodes in SAM format.
|
2024-12-12 |
|
muse
|
public |
An accurate and ultra-fast somatic point mutation calling tool for whole-genome sequencing (WGS) and whole-exome sequencing (WES) data from heterogeneous tumor samples.
|
2024-12-12 |
|
ucsc-bedclip
|
public |
Remove lines from bed file that refer to off-chromosome locations.
|
2024-12-12 |
|
pbsim2
|
public |
PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores
|
2024-12-12 |
|
ucsc-toupper
|
public |
Convert lower case to upper case in file. Leave other chars alone
|
2024-12-12 |
|
ucsc-hgloadwiggle
|
public |
Load a wiggle track definition into database
|
2024-12-12 |
|
smartdenovo
|
public |
Ultra-fast de novo assembler using long noisy reads
|
2024-12-12 |
