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flumutdb
|
public |
Utility module for FluMut database.
|
2025-04-22 |
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clermontyping
|
public |
determine the Clermont E coli phylotype
|
2025-04-22 |
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icfree-ml
|
public |
Design of experiments (DoE) and machine learning packages for the iCFree project
|
2025-04-22 |
|
mvip
|
public |
MVP v.1.0, a user-friendly pipeline written in Python and providing a simple framework to perform standard viromics analyses. MVP combines multiple tools to enable viral genome identification, characterization of genome quality, filtering, clustering, taxonomic and functional annotation, genome binning, and comprehensive summaries of results that can be used for downstream ecological analyses. Overall, MVP provides a standardized and reproducible pipeline for both extensive and robust characterization of viruses from large-scale sequencing data including metagenomes, metatranscriptomes, viromes and isolate genomes.
|
2025-04-22 |
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flumut
|
public |
A tool to search for molecular markers with potential impact on the biological characteristics of Influenza A viruses of the A(H5N1) subtype.
|
2025-04-22 |
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konezumiaid
|
public |
This is used for automatically designing gRNAs for genome editing by Target-AID.
|
2025-04-22 |
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segalign-galaxy
|
public |
SegAlign: A Scalable GPU-Based Whole Genome Aligner
|
2025-04-22 |
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r-cleangeostreamr
|
public |
Automatic curation of spatially annotated data.
|
2025-04-22 |
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spapros
|
public |
Probe set selection for targeted spatial transcriptomics.
|
2025-04-22 |
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kegg-pathways-completeness
|
public |
The tool counts completeness of each KEGG pathway for protein sequences.
|
2025-04-22 |
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pangwes
|
public |
Performing pangenome-spanning epistasis and co-selection analysis via de Bruijn graphs
|
2025-04-22 |
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blaze2
|
public |
Barcode identification from (Nanopore) Long reads for AnalyZing single-cell gene Expression.
|
2025-04-22 |
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deepmicroclass
|
public |
DeepMicroClass, a deep learning based contig prediction tool
|
2025-04-22 |
|
fraposa-pgsc
|
public |
Tools to perform ancestry projection to a reference dataset within the calculator pipeline (pgsc_calc)
|
2025-04-22 |
|
pyplink
|
public |
Python module to read binary Plink files.
|
2025-04-22 |
|
psirc
|
public |
Full-length linear and circular transcript isoform reconstruction and quantification.
|
2025-04-22 |
|
pathogen-embed
|
public |
Create reduced dimension embeddings for pathogen sequences
|
2025-04-22 |
|
tcfinder
|
public |
A lightweight tool to find clusters of samples within a phylogeny.
|
2025-04-22 |
|
cosap
|
public |
COSAP - Comparative Sequencing Analysis Platform
|
2025-04-22 |
|
bamsurgeon
|
public |
Tools for adding genomic variants to BAM/SAM/CRAM files. Can be used to test variant callers.
|
2025-04-22 |
|
deepblast
|
public |
Neural Networks for Protein Sequence Alignment.
|
2025-04-22 |
|
mmlong2
|
public |
An all-in-one genome-centric metagenomics workflow using long reads
|
2025-04-22 |
|
pygcap
|
public |
Python package for probe-based gene cluster finding in large microbial genome database.
|
2025-04-22 |
|
survindel2
|
public |
A CNV caller for Illumina paired-end WGS data.
|
2025-04-22 |
|
r-hgvsparser
|
public |
hgvsParseR
|
2025-04-22 |
