| Package Name | Access | Summary | Updated |
|---|---|---|---|
| grzctl | public | Control CLI for GRZ administrators. | 2025-10-07 |
| grz-cli | public | Tool for validation, encryption and upload of MV submissions to GDCs. | 2025-10-07 |
| grz-db | public | SQL models for grz-cli and grz-watchdog | 2025-10-07 |
| grz-pydantic-models | public | Pydantic models for the GRZ metadata schema | 2025-10-07 |
| snakedeploy | public | Helper for deploying published Snakemake pipelines. | 2025-10-07 |
| sdeper | public | Spatial Deconvolution method with Platform Effect Removal. | 2025-10-07 |
| metabolights-utils | public | MetaboLights open metabolomics data repository command line interface (CLI), common MetaboLights data models, utility methods and classes. | 2025-10-07 |
| pybiolib | public | BioLib Python Client. | 2025-10-07 |
| neat | public | Toolset for generating synthethic FASTQ, VCF and BAM files. | 2025-10-07 |
| clumppling | public | Cluster matching and permutation program with integer linear programming. | 2025-10-07 |
| get_pangenes | public | A versatile software package for calling pangenes from whole genome alignments | 2025-10-07 |
| bifidoannotator | public | Fine-grained annotation of bifidobacterial enzymes involved in human-milk glycan (HMG) utilization | 2025-10-07 |
| esviritu | public | Read mapping pipeline for detection and measurement of human and animal virus pathogens from short read metagenomic environmental or clinical samples. | 2025-10-07 |
| matchms | public | Python library for fuzzy comparison of mass spectrum data and other Python objects. | 2025-10-07 |
| wakhan | public | A tool to analyze haplotype-specific chromosome-scale somatic copy number aberrations and aneuploidy using long reads. | 2025-10-07 |
| ipyrad | public | Interactive assembly and analysis of RAD-seq data sets. | 2025-10-07 |
| usher | public | Ultrafast Sample Placement on Existing Trees (UShER). | 2025-10-07 |
| python-msgpack | public | It's like JSON. But fast and small. | 2025-10-07 |
| bbmap | public | BBMap is a short read aligner, as well as various other bioinformatic tools. | 2025-10-07 |
| last | public | LAST finds & aligns related regions of sequences. | 2025-10-07 |
| covar | public | Linked-read variant calling tool for wastewater sequencing data | 2025-10-07 |
| csubst | public | Tool for analyzing combinatorial codon substitutions in DNA sequences. | 2025-10-07 |
| sorted_nearest | public | Find nearest interval. | 2025-10-07 |
| orthologer | public | Ortholog detection for comparative genomics and fast functional annotation behind OrthoDB and BUSCO. | 2025-10-07 |
| pyvolve | public | Pyvolve is an open-source Python module for simulating sequences along a phylogenetic tree according to continuous-time Markov models of sequence evolution. | 2025-10-07 |
