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truvari
|
public |
Structural variant comparison tool for VCFs
|
2025-02-16 |
|
fastoma
|
public |
FastOMA - a package to infer orthology information among proteomes
|
2025-02-16 |
|
sevenbridges-python
|
public |
SBG API python client bindings
|
2025-02-16 |
|
pronto
|
public |
Python frontend to ontologies.
|
2025-02-16 |
|
pbsim3
|
public |
A simulator for all types of Pacific Biosciences (PacBio) and Oxford Nanopore Technologies (ONT) long reads
|
2025-02-15 |
|
tir-learner
|
public |
An ensemble pipeline for terminal inverted repeat (TIR) transposable elements annotation.
|
2025-02-15 |
|
hitac
|
public |
A hierarchical taxonomic classifier for fungal ITS sequences
|
2025-02-15 |
|
snakemake-executor-plugin-slurm-jobstep
|
public |
A Snakemake executor plugin for running srun jobs inside of SLURM jobs (meant for internal use by snakemake-executor-plugin-slurm)
|
2025-02-15 |
|
metabolights-utils
|
public |
MetaboLights open metabolomics data repository command line interface (CLI), common MetaboLights data models, utility methods and classes.
|
2025-02-15 |
|
vitap
|
public |
Viral Taxonomic Assignment Pipeline
|
2025-02-15 |
|
chopper
|
public |
A rust command line for filtering and trimming long reads.
|
2025-02-15 |
|
r-metacoder
|
public |
A set of tools for parsing, manipulating, and graphing data classified by a hierarchy (e.g. a taxonomy).
|
2025-02-14 |
|
ucsc-cell-browser
|
public |
A browser for single-cell data, main site at http://cells.ucsc.edu. UCSC Cellbrowser, an interactive browser for single cell data. Includes importers and basic pipelines for text files, Seurat, Scanpy and Cellranger. All Javascript - does not require a server backend.
|
2025-02-14 |
|
macs2
|
public |
Model Based Analysis for ChIP-Seq data
|
2025-02-14 |
|
t-coffee
|
public |
A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence
|
2025-02-14 |
|
pathogen-profiler
|
public |
Library giving access to classes and functions to create a profiling tool to look for mutations from NGS data.
|
2025-02-14 |
|
sainsc
|
public |
Segmentation-free Analysis of In Situ Capture data.
|
2025-02-14 |
|
fastobo
|
public |
Faultless AST for Open Biomedical Ontologies in Python
|
2025-02-14 |
|
ribotin
|
public |
Ribosomal DNA assembly tool
|
2025-02-14 |
|
tagbam
|
public |
A tool for tagging BAM files.
|
2025-02-14 |
|
mbuffer
|
public |
mbuffer is a tool for buffering data streams with a large set of unique features
|
2025-02-14 |
|
prymer
|
public |
Python Primer Design Library
|
2025-02-13 |
|
intarna
|
public |
Efficient RNA-RNA interaction prediction incorporating seeding and accessibility of interacting sites
|
2025-02-13 |
|
randfold
|
public |
No Summary
|
2025-02-13 |
|
diamond
|
public |
Accelerated BLAST compatible local sequence aligner.
|
2025-02-13 |
|
fgpyo
|
public |
Python bioinformatics and genomics library
|
2025-02-13 |
|
locityper
|
public |
Targeted genotyper for complex polymorphic loci from short and long read WGS.
|
2025-02-12 |
|
hmmer2
|
public |
No Summary
|
2025-02-12 |
|
pullseq
|
public |
No Summary
|
2025-02-12 |
|
regtools
|
public |
Tools that integrate DNA-seq and RNA-seq data to help interpret mutations in a regulatory and splicing context.
|
2025-02-12 |
|
capcruncher
|
public |
An end-to-end solution for processing Capture-C, Tri-C and Tiled-C data.
|
2025-02-12 |
|
ms2deepscore
|
public |
Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity
|
2025-02-12 |
|
nanoq
|
public |
Ultra-fast quality control and summary reports for nanopore reads
|
2025-02-12 |
|
rhocall
|
public |
Call regions of homozygosity and make tentative UPD calls.
|
2025-02-12 |
|
prinseq-plus-plus
|
public |
PRINSEQ++ - Multi-threaded C++ sequence cleaning
|
2025-02-12 |
|
glnexus
|
public |
scalable gVCF merging and joint variant calling for population sequencing projects.
|
2025-02-12 |
|
cooltools
|
public |
Analysis tools for genomic interaction data stored in .cool format
|
2025-02-12 |
|
cnvnator
|
public |
Tool for calling copy number variations.
|
2025-02-12 |
|
r-scevan
|
public |
Single CEll Variational Aneuploidy aNalysis
|
2025-02-12 |
|
sphae
|
public |
Phage toolkit
|
2025-02-12 |
|
relion
|
public |
Image-processing software for cryo-electron microscopy.
|
2025-02-12 |
|
pegasuspy
|
public |
An efficient Python analysis tool which scales to transcriptomes of millions of single cells.
|
2025-02-12 |
|
star
|
public |
An RNA-seq read aligner.
|
2025-02-12 |
|
quicktree
|
public |
Fast implementation of the neighbour-joining phylogenetic inference method
|
2025-02-12 |
|
fibertools-rs
|
public |
Mitchell Vollger's rust tools for fiberseq data.
|
2025-02-12 |
|
iqtree
|
public |
Efficient phylogenomic software by maximum likelihood.
|
2025-02-12 |
|
moments
|
public |
Evolutionary inference using SFS and LD statistics.
|
2025-02-12 |
|
esme_openmpi_4_1_6
|
public |
Earth System Modelling Environment (ESME) - A bundle for scientific computing packages for climate modelling with MPI support.
|
2025-02-11 |
|
esme_pnetcdf_openmpi_4_1_6
|
public |
PnetCDF - Parallel netCDF
|
2025-02-11 |
|
esme_netcdf-fortran_openmpi_4_1_6
|
public |
NetCDF-Fortran - netCDF interface for Fortran
|
2025-02-11 |
