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Package Name Access Summary Updated
bioconductor-chromhmmdata public Chromosome Size, Coordinates and Anchor Files 2024-12-17
bioconductor-tissuetreg public TWGBS and RNA-seq data from tissue T regulatory cells from mice 2024-12-17
bioconductor-ashkenazimsonchr21 public Annotated variants on the chromosome 21, human genome 19, Ashkenazim Trio son sample 2024-12-17
bioconductor-somaticadata public An example cancer whole genome sequencing data for the SomatiCA package 2024-12-17
bioconductor-jaspar2020 public Data package for JASPAR database (version 2020) 2024-12-17
bioconductor-bufferedmatrixmethods public Microarray Data related methods that utlize BufferedMatrix objects 2024-12-17
bioconductor-rtcga.rppa public RPPA datasets from The Cancer Genome Atlas Project 2024-12-17
bioconductor-seventygenedata public ExpressionSets from the van't Veer and Van de Vijver breast cancer studies 2024-12-17
bioconductor-hapmap100kxba public Sample data - Hapmap 100K XBA Affymetrix 2024-12-17
bioconductor-mouse4302barcodevecs public mouse4302 data for barcode 2024-12-17
bioconductor-meebodata public MEEBO set and MEEBO controls. 2024-12-17
bioconductor-breastcancertransbig public Gene expression dataset published by Desmedt et al. [2007] (TRANSBIG). 2024-12-17
staramr public Scan genome contigs against the ResFinder and PointFinder databases 2024-12-17
bioconductor-gigseadata public Gene set collections for the GIGSEA package 2024-12-17
bioconductor-pathnetdata public Experimental data for the PathNet package 2024-12-17
bioconductor-hicdatalymphoblast public Human lymphoblastoid HiC data from Lieberman-Aiden et al. 2009 2024-12-17
bioconductor-wes.1kg.wugsc public Whole Exome Sequencing (WES) of chromosome 22 401st to 500th exon from the 1000 Genomes (1KG) Project by the Washington University Genome Sequencing Center (WUGSC). 2024-12-17
bioconductor-affymetrixdatatestfiles public Affymetrix Data Files (CEL, CDF, CHP, EXP, PGF, PSI) for Testing 2024-12-17
bioconductor-rtcga.mirnaseq public miRNASeq datasets from The Cancer Genome Atlas Project 2024-12-17
bioconductor-rnaseqdata.hnrnpc.bam.chr14 public Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells 2024-12-17
bioconductor-breastcancernki public Genexpression dataset published by van't Veer et al. [2002] and van de Vijver et al. [2002] (NKI). 2024-12-17
bioconductor-m3dexampledata public M3Drop Example Data 2024-12-17
bioconductor-rheumaticconditionwollbold public Normalized gene expression dataset published by Wollbold et al. [2009] (WOLLBOLD). 2024-12-17
bioconductor-scannotatr.models public Pretrained models for scAnnotatR package 2024-12-17
bioconductor-bader public Bayesian Analysis of Differential Expression in RNA Sequencing Data 2024-12-17
bioconductor-garfield public GWAS Analysis of Regulatory or Functional Information Enrichment with LD correction 2024-12-17
bioconductor-graphalignment public GraphAlignment 2024-12-17
bioconductor-hdtd public Statistical Inference about the Mean Matrix and the Covariance Matrices in High-Dimensional Transposable Data (HDTD) 2024-12-17
bioconductor-aseb public Predict Acetylated Lysine Sites 2024-12-17
bioconductor-gpa public GPA (Genetic analysis incorporating Pleiotropy and Annotation) 2024-12-17
bioconductor-icare public Individualized Coherent Absolute Risk Estimation (iCARE) 2024-12-17
bioconductor-hibag public HLA Genotype Imputation with Attribute Bagging 2024-12-17
bioconductor-chopsticks public The 'snp.matrix' and 'X.snp.matrix' Classes 2024-12-17
bioconductor-hireewas public Detection of cell-type-specific risk-CpG sites in epigenome-wide association studies 2024-12-17
3seq public 3SEQ tests all sequence triplets in an alignment for a mosaic recombination signal. 2024-12-17
bioconductor-eds public eds: Low-level reader for Alevin EDS format 2024-12-17
bioconductor-dnabarcodes public A tool for creating and analysing DNA barcodes used in Next Generation Sequencing multiplexing experiments 2024-12-16
bioconductor-bufferedmatrix public A matrix data storage object held in temporary files 2024-12-16
bioconductor-twoddpcr public Classify 2-d Droplet Digital PCR (ddPCR) data and quantify the number of starting molecules 2024-12-16
survindel2 public A CNV caller for Illumina paired-end WGS data. 2024-12-16
bioconductor-exploremodelmatrix public Graphical Exploration of Design Matrices 2024-12-16
bioconductor-sevenbridges public Seven Bridges Platform API Client and Common Workflow Language Tool Builder in R 2024-12-16
bioconductor-viper public Virtual Inference of Protein-activity by Enriched Regulon analysis 2024-12-16
pbfusion public Fusion gene detection tool for PacBio Iso-Seq data 2024-12-16
bioconductor-spem public S-system parameter estimation method 2024-12-16
bioconductor-geneexpressionsignature public Gene Expression Signature based Similarity Metric 2024-12-16
bioconductor-affycomp public Graphics Toolbox for Assessment of Affymetrix Expression Measures 2024-12-16
bioconductor-cghbase public CGHbase: Base functions and classes for arrayCGH data analysis. 2024-12-16
bioconductor-convert public Convert Microarray Data Objects 2024-12-16
r-bisquerna public Provides tools to accurately estimate cell type abundances from heterogeneous bulk expression. 2024-12-16
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