| Package Name | Access | Summary | Updated |
|---|---|---|---|
| ucsc-hgfindspec | public | Create hgFindSpec table from trackDb.ra files. | 2025-06-29 |
| ucsc-chainprenet | public | Remove chains that don't have a chance of being netted. | 2025-06-29 |
| ucsc-rmfadups | public | Remove duplicate records in FA file. | 2025-06-29 |
| ucsc-spacedtotab | public | Convert fixed width space separated fields to tab separated. | 2025-06-29 |
| ucsc-splitfilebycolumn | public | Split text input into files named by column value. | 2025-06-29 |
| ucsc-netfilter | public | Filter out parts of net. What passes. | 2025-06-29 |
| ucsc-checkhgfindspec | public | Test and describe search specs in hgFindSpec tables. | 2025-06-29 |
| ucsc-fatotab | public | Convert fa file to tab separated file. | 2025-06-29 |
| ucsc-subcolumn | public | Substitute one column in a tab-separated file. | 2025-06-29 |
| ucsc-fapolyasizes | public | Get poly A sizes. | 2025-06-29 |
| ucsc-fanoise | public | Add noise to .fa file. | 2025-06-29 |
| ucsc-nettobed | public | Convert target coverage of net to a bed file. | 2025-06-29 |
| ucsc-fatofastq | public | Convert fa to fastq format, just faking quality values. | 2025-06-29 |
| ucsc-checktablecoords | public | Check invariants on genomic coords in table(s). | 2025-06-29 |
| ucsc-netclass | public | Add classification info to net. | 2025-06-29 |
| ucsc-chromgraphtobin | public | Make binary version of chromGraph. | 2025-06-29 |
| ucsc-mafgene | public | Output protein alignments using maf and genePred. | 2025-06-29 |
| ucsc-bigwigcorrelate | public | Correlate bigWig files, optionally only on target regions. | 2025-06-29 |
| ucsc-mafsinregion | public | Extract MAFS in a genomic region. | 2025-06-29 |
| ucsc-mafsplitpos | public | Pick positions to split multiple alignment input files. | 2025-06-29 |
| ucsc-taillines | public | Add tail to each line of file. | 2025-06-29 |
| ucsc-hgloadchain | public | Load a generic Chain file into database. | 2025-06-29 |
| ucsc-mafranges | public | Extract ranges of target (or query) coverage from maf and. | 2025-06-29 |
| ucsc-chromgraphfrombin | public | Convert chromGraph binary to ascii format. | 2025-06-29 |
| ucsc-matrixtobarchartbed | public | Attach a labeled expression matrix to a bed file joining. | 2025-06-29 |
