| Package Name | Access | Summary | Updated |
|---|---|---|---|
| ncbi-datasets-pyclient | public | NCBI Datasets API | 2025-07-07 |
| ervdetective | public | An efficient pipeline for identification and annotation of endogenous retroviruses (ERVs). | 2025-07-07 |
| ls-gkm | public | gkm-SVM, a sequence-based method for predicting regulatory DNA elements. | 2025-07-03 |
| genome_profiler | public | Prokaryotic genome and plasmid profiling pipeline. | 2025-07-03 |
| repeatmodeler | public | RepeatModeler is a de-novo repeat family identification and modeling package. | 2025-07-03 |
| repeatafterme | public | A package for the extension of repetitive DNA sequences. | 2025-07-03 |
| domclust | public | Effective tool for orthologous grouping in multiple genomes | 2025-07-03 |
| beast | public | BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC. | 2025-07-03 |
| primer3-py | public | Python bindings for Primer3 | 2025-07-02 |
| bwa-mem2 | public | The next version of bwa-mem. | 2025-07-02 |
| phasius | public | A rust tool to create phase-block maps from phased cram/bam files. | 2025-07-02 |
| r-lme4qtl | public | Linear mixed models (lme4) with flexible covariance structure for qtl and association analysis. | 2025-07-02 |
| panman | public | PanMAN | 2025-07-02 |
| rabies | public | RABIES: Rodent Automated Bold Improvement of EPI Sequences. | 2025-07-02 |
| endorspy | public | endorS.py calculates endogenous DNA from samtools flagstat files and print to screen. | 2025-07-02 |
| crispresso2 | public | A software pipeline designed to enable rapid and intuitive interpretation of genome editing experiments. | 2025-07-02 |
| phabox | public | Virus identification and analysis tool set | 2025-07-02 |
| lorax | public | A long-read analysis toolbox for cancer genomics | 2025-07-02 |
| replidec | public | Replication Cycle Decipher for Phages. | 2025-07-02 |
| fragpipe | public | Pipeline for comprehensive analysis of shotgun proteomics data | 2025-07-02 |
| hybpiper | public | HybPiper is a suite of Python scripts/modules for targeted sequence capture. | 2025-07-02 |
| ucsc-overlapselect | public | Select records based on overlapping chromosome ranges. | 2025-07-02 |
| qcatch | public | QCatch: Quality Control downstream of alevin-fry / simpleaf. | 2025-07-02 |
| ezomero | public | A module with convenience functions for writing Python code that interacts with OMERO. | 2025-07-01 |
| faststructure | public | A variational framework for inferring population structure from SNP genotype data. | 2025-07-01 |
