| Package Name | Access | Summary | Updated |
|---|---|---|---|
| chamois | public | Chemical Hierarchy Approximation for secondary Metabolism clusters Obtained In Silico. | 2025-07-14 |
| addeam | public | A Fast and Scalable Tool for Estimating and Clustering Reference-Level Damage Profiles. | 2025-07-14 |
| libpdb-redo | public | Library containing shared code for various PDB-REDO programs. | 2025-07-14 |
| showali | public | Minimalistic TUI viewer for aligned biological sequences (FASTA, ALN, MAF, PHYLIP) | 2025-07-14 |
| parm | public | promoter activity regulatory model | 2025-07-14 |
| srahunter | public | srahunter is a tool for processing SRA accession numbers. | 2025-07-14 |
| demultiplexer2 | public | A python command line interface to demultiplex illumina reads. | 2025-07-14 |
| miniprot | public | Miniprot aligns a protein sequence against a genome with affine gap penalty, splicing and frameshift. It is primarily intended for annotating protein-coding genes in a new species using known genes from other species. | 2025-07-13 |
| syny | public | Genome collinearity inferences | 2025-07-11 |
| breakfast | public | breakfast: fast putative outbreak cluster and infection chain detection using SNPs. | 2025-07-10 |
| gencove | public | Gencove is a high-throughput, cost-effective platform for genome sequencing and analysis. This command-line interface can be used to easily access the Gencove API. | 2025-07-10 |
| fmlrc2 | public | A rust implementation of fmlrc with faster run times. | 2025-07-10 |
| ropebwt2 | public | Incremental construction of FM-index for DNA sequences | 2025-07-10 |
| d4tools | public | The D4 command line utility program | 2025-07-10 |
| slivar | public | filter/annotate variants in VCF/BCF format with simple expressions. | 2025-07-10 |
| somalier | public | Fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs. | 2025-07-09 |
| gotree | public | gotree is a set of command line tools to manipulate phylogenetic trees. | 2025-07-09 |
| seqtk | public | Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format | 2025-07-09 |
| multitax | public | Python package to obtain, parse and explore biological taxonomies. | 2025-07-09 |
| busco | public | Assessment of assembly completeness using Universal Single Copy Orthologs. | 2025-07-09 |
| barcode-validator | public | A python package for structural and taxonomic validation of DNA barcode data | 2025-07-09 |
| pia | public | PIA is a toolbox for MS based protein inference and identification analysis. | 2025-07-09 |
| cerberus-x | public | Versatile Functional Ontology Assignments via Hidden Markov Model (HMM) searching with environmental focus of shotgun 'omics data. | 2025-07-09 |
| perl-io-zlib | public | IO:: style interface to Compress::Zlib | 2025-07-09 |
| yame | public | YAME: Yet Another Methylation Extractor. | 2025-07-09 |
