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socru
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public |
Order and orientation of complete bacterial genomes
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2025-07-14 |
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genoboo
|
public |
A collaborative notebook for comparative genomics (active fork of GeneNoteBook)
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2025-07-14 |
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r-floral
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public |
Log-ratio Lasso regression for continuous, binary, and survival outcomes with (longitudinal) compositional features. See Fei and others (2024) <doi:10.1016/j.crmeth.2024.100899>.
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2025-07-14 |
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gencube
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public |
GenCube enables researchers to search for, download, retrieve metadata, and unify genome assemblies and diverse types of annotations for sequencing-based experimental data.
|
2025-07-14 |
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kcounter
|
public |
A simple package for counting DNA k-mers in Python. Written in Rust.
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2025-07-14 |
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pyngost
|
public |
pyngoST: fast, simultaneous and accurate and multiple sequence typing of Neisseria gonorrhoeae genome collections
|
2025-07-14 |
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pangwas
|
public |
A pipeline for pangenome wide association studies (panGWAS).
|
2025-07-14 |
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marker-magu
|
public |
Marker-MAGu: Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes
|
2025-07-14 |
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vpt-cellpose2
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public |
Meta-package for VPT with Cellpose 2 plugin
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2025-07-14 |
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chamois
|
public |
Chemical Hierarchy Approximation for secondary Metabolism clusters Obtained In Silico.
|
2025-07-14 |
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addeam
|
public |
A Fast and Scalable Tool for Estimating and Clustering Reference-Level Damage Profiles.
|
2025-07-14 |
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libpdb-redo
|
public |
Library containing shared code for various PDB-REDO programs.
|
2025-07-14 |
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showali
|
public |
Minimalistic TUI viewer for aligned biological sequences (FASTA, ALN, MAF, PHYLIP)
|
2025-07-14 |
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parm
|
public |
promoter activity regulatory model
|
2025-07-14 |
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srahunter
|
public |
srahunter is a tool for processing SRA accession numbers.
|
2025-07-14 |
|
demultiplexer2
|
public |
A python command line interface to demultiplex illumina reads.
|
2025-07-14 |
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miniprot
|
public |
Miniprot aligns a protein sequence against a genome with affine gap penalty, splicing and frameshift. It is primarily intended for annotating protein-coding genes in a new species using known genes from other species.
|
2025-07-13 |
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syny
|
public |
Genome collinearity inferences
|
2025-07-11 |
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breakfast
|
public |
breakfast: fast putative outbreak cluster and infection chain detection using SNPs.
|
2025-07-10 |
|
gencove
|
public |
Gencove is a high-throughput, cost-effective platform for genome sequencing and analysis. This command-line interface can be used to easily access the Gencove API.
|
2025-07-10 |
|
fmlrc2
|
public |
A rust implementation of fmlrc with faster run times.
|
2025-07-10 |
|
ropebwt2
|
public |
Incremental construction of FM-index for DNA sequences
|
2025-07-10 |
|
d4tools
|
public |
The D4 command line utility program
|
2025-07-10 |
|
slivar
|
public |
filter/annotate variants in VCF/BCF format with simple expressions.
|
2025-07-10 |
|
somalier
|
public |
Fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs.
|
2025-07-09 |
