| Package Name | Access | Summary | Updated |
|---|---|---|---|
| slclust | public | A utility that performs single-linkage clustering with the option of applying a Jaccard similarity coefficient to break weakly bound clusters into distinct clusters. | 2025-07-16 |
| crossfilt | public | Tools to filter reads causing alignment bias in cross-species genomic comparisons. | 2025-07-16 |
| seabreeze-genomics | public | Analyzing Structural Variation Between Bacterial Genome Assemblies. | 2025-07-16 |
| tn93 | public | This is a simple program meant to compute pairwise distances between aligned nucleotide sequences in sequential FASTA format using the Tamura Nei 93 distance. | 2025-07-16 |
| star-fusion | public | STAR-Fusion fusion variant caller. All dependencies required to run FusionInspector and FusionAnnotator are included. | 2025-07-16 |
| minimod | public | A bioinformatics tool for viewing and calculating base modification frequencies from BAM files | 2025-07-16 |
| cressent | public | A comprehensive toolkit for ssDNA virus analysis | 2025-07-16 |
| atlas | public | ATLAS: Analysis Tools for Ancient and Low-depth Samples | 2025-07-16 |
| methylartist | public | Tools for parsing and plotting nanopore methylation data. | 2025-07-16 |
| searchgui | public | User-friendly graphical tool for using proteomics identification search engines. | 2025-07-16 |
| scoop | public | Scalable COncurrent Operations in Python. | 2025-07-16 |
| ggcat | public | Compacted and colored de Bruijn graph construction and querying. | 2025-07-16 |
| wheezy.template | public | A lightweight template library. | 2025-07-16 |
| maxentpy | public | maxentpy is a python wrapper for MaxEntScan to calculate splice site strength. | 2025-07-16 |
| pytantan | public | Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and protein sequences. | 2025-07-16 |
| anospp-analysis | public | ANOSPP data analysis | 2025-07-16 |
| plateo | public | Read/write microplate and picklist data for lab automation | 2025-07-16 |
| staden_io_lib | public | Staden io_lib is a library of file reading and writing code e.g. for SAM/BAM/CRAM. | 2025-07-16 |
| coverm | public | CoverM aims to be a configurable, easy to use and fast DNA read coverage and relative abundance calculator focused on metagenomics applications | 2025-07-16 |
| pcangsd | public | Framework for analyzing low-depth next-generation sequencing (NGS) data in heterogeneous/structured populations using principal component analysis (PCA). | 2025-07-16 |
| mapdamage2 | public | mapDamage: tracking and quantifying damage patterns in ancient DNA sequencing reads generated by Next-Generation Sequencing platforms. | 2025-07-16 |
| automappa | public | Automappa: An interactive interface for exploration of metagenomes. | 2025-07-15 |
| famsa | public | Algorithm for large-scale multiple sequence alignments. | 2025-07-15 |
| kleborate | public | Kleborate: a tool for typing and screening pathogen genome assemblies. | 2025-07-15 |
| seqnado | public | Pipelines for genomics analysis | 2025-07-15 |
