| Package Name | Access | Summary | Updated |
|---|---|---|---|
| agc | public | Assembled Genomes Compressor (AGC) is a tool designed to compress collections of de-novo assembled genomes. It can be used for various types of datasets: short genomes (viruses) as well as long (humans). | 2025-07-30 |
| reseek | public | Protein structure alignment and search algorithm. | 2025-07-30 |
| racon | public | Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. | 2025-07-30 |
| khipu-metabolomics | public | Python library for generalized, low-level annotation of MS metabolomics. | 2025-07-30 |
| fishplotpy | public | A Python implementation for visualizing clonal evolution dynamics using fish plots | 2025-07-30 |
| delly | public | Structural variant discovery by integrated paired-end and split-read analysis. | 2025-07-30 |
| influx-si-data-manager | public | Data manager for handling influx_si inputs on Workflow4Metabolomics (usegalaxy.org) | 2025-07-30 |
| eukrep | public | Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets | 2025-07-30 |
| snakemake-executor-plugin-cluster-sync | public | A Snakemake executor plugin for cluster jobs that are executed synchronously. | 2025-07-30 |
| epicore | public | Compute core epitopes from multiple overlapping peptides. | 2025-07-30 |
| svpg | public | Pangenome-based structural variation caller | 2025-07-30 |
| foldcomp | public | Foldcomp: a library and format for compressing and indexing large protein structure sets | 2025-07-30 |
| smakcr | public | Count short k-mers fast | 2025-07-30 |
| ska | public | SKA (Split Kmer Analysis) | 2025-07-30 |
| nohuman | public | Remove human reads from a sequencing run. | 2025-07-30 |
| aliceasm | public | Efficient HiFi genome assembler producing haplotype-separated assemblies. | 2025-07-30 |
| ampliconsplitter | public | Split highly similar collapsed amplicons to obtain all amplicons from a sample. | 2025-07-30 |
| cif-tools | public | A suite of programs to manipulate and examine mmCIF files | 2025-07-30 |
| cmat | public | ClinVar Mapping and Annotation Toolkit. | 2025-07-29 |
| crazydoc | public | Read genetic sequences from stylized docx files | 2025-07-29 |
| rust-proseg | public | A Rust crate for running Proseg, a cell segmentation method for in situ spatial transcriptomics. | 2025-07-29 |
| odgi | public | An optimized dynamic genome/graph implementation. | 2025-07-29 |
| reduce | public | Reduce - tool for adding and correcting hydrogens in PDB files. | 2025-07-29 |
| corneto | public | CORNETO: A Unified Framework for Omics-Driven Network Inference. | 2025-07-29 |
| trgt | public | Tandem repeat genotyping and visualization from PacBio HiFi data | 2025-07-29 |
