| Package Name | Access | Summary | Updated |
|---|---|---|---|
| geno2phenotb | public | Prediction of Mycobacterium tuberculosis drug resistance from WGS data | 2025-08-01 |
| tortoize | public | Application to calculate ramachandran z-scores | 2025-08-01 |
| bioemu | public | Biomolecular emulator for scalable emulation of protein equilibrium ensembles with generative deep learning | 2025-08-01 |
| hapcut2 | public | Tools for haplotype assembly from sequence data | 2025-08-01 |
| spacerextractor | public | Extract CRISPR spacers from metagenome short reads. | 2025-08-01 |
| libsequence | public | A C++ class library for evolutionary genetics. | 2025-08-01 |
| genometools-genometools | public | GenomeTools genome analysis system. | 2025-07-31 |
| bcbio-gff | public | A Python library to read and write Generic Feature Format (GFF). | 2025-07-31 |
| gndiff | public | GNdiff compares scientific names from two files | 2025-07-31 |
| ezaai | public | EzAAI is a suite of workflows for improved AAI calculation performance along with the novel module that provides hierarchical clustering analysis and dendrogram representation. | 2025-07-31 |
| cyvcf2 | public | A cython wrapper around htslib built for fast parsing of Variant Call Format (VCF) files | 2025-07-31 |
| genome-uploader | public | Python script to upload bins and MAGs in fasta format to ENA (European Nucleotide Archive). | 2025-07-31 |
| bifrost-httr | public | Pre-release version for testing purposes only | 2025-07-31 |
| nomadic | public | Mobile sequencing and analysis in real-time | 2025-07-31 |
| changeo | public | A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data. | 2025-07-31 |
| ntcard | public | Estimating k-mer coverage histogram of genomics data | 2025-07-31 |
| cuttlefish | public | Construction of the compacted de Bruijn graph efficiently | 2025-07-31 |
| ghostz | public | GHOSTZ is a highly efficient remote homologue detection tool | 2025-07-31 |
| soapdenovo-trans | public | No Summary | 2025-07-31 |
| blue-crab | public | lossless nanopore pod5 <=> s/blow5 file conversion | 2025-07-31 |
| jccirc | public | circRNA assembler through integrated junction contigs | 2025-07-31 |
| r-pathosurveilr | public | Utilities for interacting with the pathogensurveillance pipeline. | 2025-07-31 |
| trtools | public | Toolkit for genome-wide analysis of tandem repeats | 2025-07-31 |
| ciri-full | public | Full length circRNA reconstruction and quantification using BSJ and reverse overlap (RO) features. | 2025-07-31 |
| sspace_basic | public | Scaffolding Pre-Assemblies After Contig Extension (SSPACE) | 2025-07-31 |
