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krepp
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public |
A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement of metagenomic samples.
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2025-08-18 |
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r-signac
|
public |
A framework for the analysis and exploration of single-cell chromatin data. The 'Signac' package contains functions for quantifying single-cell chromatin data, computing per-cell quality control metrics, dimension reduction and normalization, visualization, and DNA sequence motif analysis.
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2025-08-18 |
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ultraplex
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public |
An all-in-one software package for processing and demultiplexing fastq files.
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2025-08-18 |
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perl-term-detect-software
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public |
Detect terminal (emulator) software and its capabilities.
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2025-08-18 |
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gapmm2
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public |
gapmm2: gapped alignment using minimap2.
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2025-08-18 |
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squirrel
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public |
Some QUIck Reconstruction to Resolve Evolutionary Links.
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2025-08-18 |
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hcluster_sg
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public |
A tool for hierarchically clustering on a sparse graph
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2025-08-18 |
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nanocomp
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public |
Comparing runs of Oxford Nanopore sequencing data and alignments
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2025-08-18 |
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biocantor
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public |
Coordinate Maniuplation and Genome Annotation Data Model
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2025-08-18 |
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mzmine
|
public |
Integrative analysis of multimodal mass spectrometry data.
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2025-08-18 |
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kractor
|
public |
Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.
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2025-08-18 |
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sunbeamlib
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public |
A robust, extensible metagenomic sequencing pipeline.
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2025-08-18 |
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rdrpcatch
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public |
RNA virus RdRp sequence scanner.
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2025-08-18 |
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vg
|
public |
Variation graph data structures, interchange formats, alignment, genotyping, and variant calling methods
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2025-08-18 |
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planemo
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public |
Command-line utilities to assist in building tools for the Galaxy project (https://galaxyproject.org).
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2025-08-18 |
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accusnv
|
public |
High-accuracy SNV calling for bacterial isolates using AccuSNV.
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2025-08-18 |
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matam
|
public |
MATAM is a software dedicated to the fast and accurate targeted assembly of short reads.
|
2025-08-16 |
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intarna
|
public |
Efficient RNA-RNA interaction prediction incorporating seeding and accessibility of interacting sites
|
2025-08-16 |
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mdasim
|
public |
This is MDAsim 2+, a tool to simulate whole genome amplification of a DNA sequence with multiple displacement amplification. A citation for this version will be provided when available. MDAsim 2+ extends MDAsim 1.2, so please also always cite: Tagliavi Z, Draghici S. MDAsim: A multiple displacement amplification simulator. 2012 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). 2012. pp. 1–4. doi:10.1109/BIBM.2012.6392622
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2025-08-16 |
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esme_netcdf-fortran_mvapich_4_0_ofi
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public |
NetCDF-Fortran - netCDF interface for Fortran
|
2025-08-16 |
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perl-extutils-cppguess
|
public |
Guess C++ compiler and flags.
|
2025-08-16 |
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esme_pnetcdf_mvapich_4_0_ofi
|
public |
PnetCDF - Parallel netCDF
|
2025-08-16 |
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arvados-cwl-runner
|
public |
Arvados Common Workflow Language runner.
|
2025-08-16 |
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perl-pegex
|
public |
Pegex Grammar for the Pegex Grammar Language.
|
2025-08-16 |
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crunchstat-summary
|
public |
Arvados crunchstat-summary reads crunch log files and summarizes resource usage.
|
2025-08-15 |
