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nextflow
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public |
A DSL for data-driven computational pipelines http://nextflow.io
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2025-01-21 |
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vvv2_display
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public |
Creates png image file with all [vardict] variants proportions alongside genome/assembly with annotations from [vadr].
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2025-01-21 |
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severus
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public |
A tool for somatic structural variant calling using long reads
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2025-01-21 |
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neat
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public |
Toolset for generating synthethic FASTQ, VCF and BAM files.
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2025-01-21 |
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hybracter
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public |
An automated long-read first bacterial genome assembly pipeline.
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2025-01-21 |
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deeptools
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public |
A set of user-friendly tools for normalization and visualzation of deep-sequencing data
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2025-01-20 |
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ms2rescore-rs
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public |
Rust functionality for the MS²Rescore package
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2025-01-20 |
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foldseek
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public |
Foldseek: fast and accurate protein structure search
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2025-01-20 |
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tissuumaps
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public |
TissUUmaps is a lightweight viewer that uses basic web tools to visualize gene expression data or any kind of point data on top of whole slide images
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2025-01-20 |
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poseidon-trident
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public |
A tool (trident) to work with modular genotype databases formatted using Poseidon.
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2025-01-20 |
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t-coffee
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public |
A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence
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2025-01-20 |
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memopair
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public |
A package for identifying methylated motif pairs
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2025-01-20 |
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ourotools
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public |
A comprehensive toolkit for quality control and analysis of single-cell long-read RNA-seq data
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2025-01-20 |
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pharokka
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public |
Fast Phage Annotation Program
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2025-01-20 |
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metabolights-utils
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public |
MetaboLights open metabolomics data repository command line interface (CLI), common MetaboLights data models, utility methods and classes.
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2025-01-19 |
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superintervals
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public |
Rapid interval intersections
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2025-01-18 |
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mmseqs2
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public |
MMseqs2: ultra fast and sensitive sequence search and clustering suite
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2025-01-18 |
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biobb_morph
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public |
biobb_morph is the Biobb module collection to perform molecular dynamics simulations using the morph MD suite.
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2025-01-18 |
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gxf2bed
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public |
Fastest GTF/GFF-to-BED converter chilling around
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2025-01-18 |
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wipertools
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public |
A suite of programs that drop or fix pesky lines in FASTQ files and that split FASTQ files into chunks or merge them.
|
2025-01-17 |
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fasten
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public |
Perform random operations on fastq files, using unix streaming. Secure your analysis with Fasten!
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2025-01-17 |
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trgt
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public |
Tandem repeat genotyping and visualization from PacBio HiFi data
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2025-01-17 |
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pango-designation
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public |
Repository for suggesting new lineages that should be added to the current scheme.
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2025-01-17 |
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libbigwig
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public |
A C library for handling bigWig files
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2025-01-17 |
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pastml
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public |
Ancestral character reconstruction and visualisation for rooted phylogenetic trees.
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2025-01-17 |
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bayescode
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public |
Mutation-Selection phylogenetic codon models to detect site-specific adaptive evolution or to infer long-term effective population size
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2025-01-17 |
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predictosaurus
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public |
Predictosaurus is a command-line tool designed for uncertainty-aware haplotype-based genomic variant effect prediction.
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2025-01-17 |
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qimba
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public |
Toolkit for metabarcoding analyses
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2025-01-17 |
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centrifuger
|
public |
Lossless compression of microbial genomes for efficient and accurate metagenomic sequence classification.
|
2025-01-17 |
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octopusv
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public |
OctopusV: Advanced Structural Variant Analysis Toolkit
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2025-01-17 |
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bioconductor-s4vectors
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public |
Foundation of vector-like and list-like containers in Bioconductor
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2025-01-17 |
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bioconductor-biostrings
|
public |
Efficient manipulation of biological strings
|
2025-01-17 |
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bioconductor-iranges
|
public |
Foundation of integer range manipulation in Bioconductor
|
2025-01-17 |
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bioconductor-zlibbioc
|
public |
An R packaged zlib-1.2.5
|
2025-01-17 |
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bioconductor-xvector
|
public |
Foundation of external vector representation and manipulation in Bioconductor
|
2025-01-17 |
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crispresso2
|
public |
A software pipeline designed to enable rapid and intuitive interpretation of genome editing experiments.
|
2025-01-17 |
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cogent3
|
public |
COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems with 1000s of CPUs.
|
2025-01-17 |
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last
|
public |
LAST finds & aligns related regions of sequences.
|
2025-01-16 |
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bbmap
|
public |
BBMap is a short read aligner, as well as various other bioinformatic tools.
|
2025-01-16 |
|
perbase
|
public |
Per-base metrics on BAM/CRAM files.
|
2025-01-16 |
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ena-webin-cli
|
public |
Data submissions to ENA can be made using the Webin command line submission interface (Webin-CLI).
|
2025-01-16 |
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flexynesis
|
public |
A deep-learning-based multi-omics bulk sequencing data integration suite with a focus on (pre-)clinical endpoint prediction.
|
2025-01-16 |
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r-shinyngs
|
public |
Provides Shiny applications for various array and NGS applications. Currently very RNA-seq centric, with plans for expansion.
|
2025-01-16 |
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dadaist2
|
public |
Command line wrapper to run DADA2 on a set of paired-end reads
|
2025-01-16 |
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pbstarphase
|
public |
A phase-aware pharmacogenomic diplotyper for PacBio sequencing data
|
2025-01-16 |
|
r-ukbrapr
|
public |
R functions to use in the UK Biobank Research Analysis Platform (RAP)
|
2025-01-16 |
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geomloss
|
public |
Geometric loss functions between point clouds, images and volumes.
|
2025-01-16 |
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rdeval
|
public |
A general purpose, multithreaded read analysis and manipulation tool.
|
2025-01-16 |
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immuneml
|
public |
immuneML is a software platform for machine learning analysis of immune receptor repertoires.
|
2025-01-16 |
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pymethylation_utils
|
public |
Python wrapper for the methylation_utils Rust binary
|
2025-01-16 |
