| Package Name | Access | Summary | Updated |
|---|---|---|---|
| paml | public | A package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. | 2025-08-20 |
| sepp | public | SATe-enabled phylogenetic placement. | 2025-08-20 |
| bioconductor-dupradar | public | Assessment of duplication rates in RNA-Seq datasets | 2025-08-20 |
| hail | public | Hail is Python-based data analysis tool for working with genomic data. | 2025-08-20 |
| jvarkit-bamstats04 | public | Coverage statistics for a BED file. | 2025-08-20 |
| macsylib | public | MacSyLib: Python library that help to detect of macromolecular, systems genetic pathways… in prokaryotes protein datasets using systems modelling and similarity search. | 2025-08-20 |
| hi-corrector | public | Remove biases from chromatin contact matrices generated by genome-wide proximity ligation assays, e.g. Hi-C and its variant TCC | 2025-08-20 |
| ushuffle | public | uShuffle---a useful tool for shuffling biological sequences while preserving the k-let counts | 2025-08-20 |
| perl-bio-procedural | public | Simple low-dependency procedural interfaces to BioPerl | 2025-08-20 |
| gargammel | public | Tool for simulating ancient DNA datasets. | 2025-08-19 |
| samblaster | public | Mark duplicates in and extract discordant and split reads from SAM files. | 2025-08-19 |
| perl-inline-c | public | C Language Support for Inline. | 2025-08-19 |
| lumpy-sv-minimal | public | A general probabilistic framework for structural variant discovery. This package contains only the lumpy executable | 2025-08-19 |
| dxpy | public | DNAnexus Platform API bindings for Python | 2025-08-19 |
| nanoplot | public | Plotting suite for long read sequencing data and alignments. | 2025-08-19 |
| medaka | public | A tool to create consensus sequences and variant calls from nanopore sequencing data using neural networks. | 2025-08-19 |
| fastq-tools | public | A collection of fastq manipulation scripts written in C for speed. | 2025-08-19 |
| reditools3 | public | REDItools3 is an RNA editing detection tool implemented in Python3 for analyzing RNA-seq data. | 2025-08-19 |
| haplotaglr | public | Haplotagging individual long reads using known haplotype information. | 2025-08-19 |
| hisat2-pipeline | public | A pipeline to automatically run an RNA-seq analysis using HISAT2/Stringtie using default settings. | 2025-08-19 |
| ms2deepscore | public | Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity | 2025-08-19 |
| grz-cli | public | Tool for validation, encryption and upload of MV submissions to GDCs. | 2025-08-19 |
| taxburst | public | sunburst plots for taxonomy | 2025-08-19 |
| snakemake-storage-plugin-irods | public | A Snakemake plugin for handling input and output on iRODS. | 2025-08-19 |
| grz-pydantic-models | public | Pydantic models for the GRZ metadata schema | 2025-08-19 |
