|
viroconstrictor
|
public |
ViroConstrictor is a flexible pipeline for analysis of targeted viral sequencing data
|
2025-07-29 |
|
nanoblaster
|
public |
Basic Local Alignment and Search Tool for Oxford Nanopore Long Sequences
|
2025-07-28 |
|
bte
|
public |
Cython wrapper enabling use of the MAT library in Python.
|
2025-07-28 |
|
kcftools
|
public |
Rapid method to screen for introgression using k-mer counting
|
2025-07-28 |
|
sequana
|
public |
A set of standalone application and snakemake pipelines dedicated to NGS (new generation sequencing) analysis.
|
2025-07-28 |
|
superintervals
|
public |
Rapid interval intersections.
|
2025-07-28 |
|
ensembl-py
|
public |
Ensembl Python base library
|
2025-07-28 |
|
mupbwt
|
public |
A light pbwt-based index
|
2025-07-28 |
|
sequana_pipetools
|
public |
A set of tools to help building or using Sequana pipelines
|
2025-07-28 |
|
usher
|
public |
Ultrafast Sample Placement on Existing Trees (UShER).
|
2025-07-28 |
|
antismash
|
public |
antiSMASH - the antibiotics and Secondary Metabolite Analysis SHell.
|
2025-07-28 |
|
diamond
|
public |
Accelerated BLAST compatible local sequence aligner.
|
2025-07-28 |
|
hmftools-pave
|
public |
PAVE annotates SNV/MNV/INDEL calls with consequence on corresponding genes, transcripts, and proteins.
|
2025-07-28 |
|
hmftools-cobalt
|
public |
Calculate read-depth counts and GC ratios to use in PURPLE.
|
2025-07-28 |
|
hmftools-isofox
|
public |
Isofox is a tool for counting fragment support for identifying and counting gene and transcript features using genome aligned RNASeq data in tumor samples.
|
2025-07-28 |
|
readfq
|
public |
A high-speed tool to calculate reads number and total base count in FASTQ file, forked from Li Heng's original version
|
2025-07-28 |
|
kmergenie
|
public |
KmerGenie estimates the best k-mer length for genome de novo assembly
|
2025-07-28 |
|
ribotin
|
public |
Ribosomal DNA assembly tool.
|
2025-07-28 |
|
maker
|
public |
MAKER is a portable and easily configurable genome annotation pipeline.
|
2025-07-28 |
|
mp-est
|
public |
Maximum Pseudo-likelihood Estimation of Species Trees
|
2025-07-28 |
|
winnowmap
|
public |
Winnowmap is a long-read mapping algorithm optimized for mapping ONT and PacBio reads to repetitive reference sequences.
|
2025-07-28 |
|
graphaligner
|
public |
Sequence to graph aligner for long reads
|
2025-07-27 |
|
plass
|
public |
Plass (Protein-Level ASSembler) and PenguiN (Protein-guided Nucleotide assembler) are methods to assemble short read sequencing data on a protein level to proteins or DNA contigs
|
2025-07-27 |
|
spacepharer
|
public |
SpacePHARER: Sensitive identification of phages from CRISPR spacers in prokaryotic hosts
|
2025-07-27 |
|
alphafill
|
public |
Transplant missing compounds to the AlphaFold models
|
2025-07-27 |
